SMTL ID : 5nzi.1

Crystal structure of UDP-glucose pyrophosphorylase S374F mutant from Leishmania major in complex with UDP-glucose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)

UPG.1: 21 residues within 4Å: Chain A: L.81, N.82, G.83, G.84, M.130, Q.162, P.188, G.190, H.191, N.219, G.220, D.221, G.256, G.257, L.282, E.284, F.305, N.306, N.308, F.376, K.380 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:N.82, A:G.83, A:G.84, A:Q.162, A:Q.162, A:G.190, A:H.191, A:N.219, A:G.220, A:D.221, A:G.257, A:G.257, A:E.284, A:N.306, A:K.380 Water bridges: A:L.81, A:D.221, A:D.221, A:N.308, A:N.308 Salt bridges: A:H.191, A:H.191, A:K.380, A:K.380, A:K.380

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: Q.74, S.75, Q.210, G.211, Y.212 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.211 EDO.3: 5 residues within 4Å: Chain A: A.22, F.133, Q.164, A.183, W.186 No protein-ligand interaction detected (PLIP) EDO.4: 6 residues within 4Å: Chain A: E.67, C.121, I.227, D.228, K.229, R.230 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.228, A:K.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cramer, J.T. et al., Decoding Allosteric Networks in Biocatalysts: Rational Approach to Therapies and Biotechnologies. Acs Catalysis (2018)

Release Date

2018-04-18

Peptides

UDP-glucose pyrophosphorylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-glucose pyrophosphorylase