SMTL ID : 5nzo.1

Crystal structure of human 3-phosphoglycerate dehydrogenase in complex with 1-methyl-3-phenyl-1H-pyrazol-5-amine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.29 Å

Oligo State

homo-dimer

Ligands

2 x 9EZ: 2-methyl-5-phenyl-pyrazol-3-amine(Non-covalent)

9EZ.1: 9 residues within 4Å: Chain A: L.52, G.53, Y.75, P.77, T.108, P.109, L.111, T.114, L.117 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.75, A:Y.75, A:P.77, A:T.108, A:T.114, A:L.117 9EZ.2: 8 residues within 4Å: Chain B: G.53, Y.75, P.77, T.108, P.109, L.111, T.114, L.117 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Y.75, B:Y.75, B:T.108, B:T.114, B:L.117 Water bridges: B:D.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Unterlass, J.E. et al., Validating and enabling phosphoglycerate dehydrogenase (PHGDH) as a target for fragment-based drug discovery in PHGDH-amplified breast cancer. Oncotarget (2018)

Release Date

2017-06-14

Peptides

D-3-phosphoglycerate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

D-3-phosphoglycerate dehydrogenase

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