SMTL ID : 5o0j.1

ADP-dependent glucokinase from Pyrococcus horikoshii

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

2 x 8BR: 8-BROMO-ADENOSINE-5'-MONOPHOSPHATE(Non-covalent)

8BR.1: 15 residues within 4Å: Chain A: E.194, R.196, N.291, H.341, T.342, Y.343, A.372, K.426, V.427, V.428, P.431, T.434, I.437, G.438, I.441 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:N.291, A:T.342, A:V.428, A:V.428 Water bridges: A:R.196, A:R.196, A:R.196, A:R.196, A:H.341, A:G.344, A:G.438 Salt bridges: A:R.196, A:H.341 8BR.2: 7 residues within 4Å: Chain A: W.78, R.82, K.84, A.85, A.86, F.268, V.293 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:A.85 Water bridges: A:R.82, A:R.82, A:E.87, A:R.275, A:R.275, A:S.300 Salt bridges: A:R.82, A:K.84 pi-Stacking: A:W.78, A:W.78, A:F.268, A:F.268

1 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.3: 14 residues within 4Å: Chain A: N.29, N.31, D.33, E.87, G.110, G.111, Q.112, I.115, H.175, I.177, I.198, V.435, G.436, D.439 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:N.29, A:N.31, A:D.33, A:E.87, A:G.111, A:Q.112, A:Q.112, A:H.175 Water bridges: A:H.175, A:G.436, A:D.439, A:D.439 Salt bridges: A:H.234

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grudnik, P. et al., Structural basis for ADP-dependent glucokinase inhibition by 8-bromo-substituted adenosine nucleotide. J. Biol. Chem. (2018)

Release Date

2018-05-30

Peptides

ADP-dependent glucokinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ADP-dependent glucokinase