SMTL ID : 5o13.1

Crystal structure of PIM1 kinase in complex with small-molecule inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

monomer

Ligands

1 x 9G5: (3~{E})-5-chloranyl-3-[[5-[3-[(4-methyl-1,4-diazepan-1-yl)carbonyl]phenyl]furan-2-yl]methylidene]-1~{H}-indol-2-one(Non-covalent)

9G5.1: 16 residues within 4Å: Chain A: L.29, G.30, F.34, V.37, A.50, K.52, I.89, L.105, E.106, R.107, V.111, Q.112, D.113, D.116, L.159, I.170 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.34, A:F.34, A:V.37, A:V.37, A:A.50, A:I.89, A:L.105, A:V.111, A:I.170, A:I.170 Hydrogen bonds: A:K.52, A:D.113, A:D.116 Water bridges: A:D.171 Salt bridges: A:D.116

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.2: 2 residues within 4Å: Chain A: S.246, Q.249 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.249

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: F.186, R.190, W.197 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bogusz, J. et al., Structural analysis of PIM1 kinase complexes with ATP-competitive inhibitors. Sci Rep (2017)

Release Date

2017-11-01

Peptides

Serine/threonine-protein kinase pim-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase pim-1

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