SMTL ID : 5o19.1

Japanese encephalitis virus non-structural protein 1 C-terminal domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

24 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: T.132, D.133, S.134, K.136, T.173, T.174 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: K.91, K.123, R.124, R.144 Ligand excluded by PLIP SO4.3: 2 residues within 4Å: Chain A: R.177, Q.179 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: K.91, R.124, M.163 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: R.35, R.44 Chain B: N.101 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: G.125, P.126, R.177 Ligand excluded by PLIP SO4.7: 2 residues within 4Å: Chain A: R.129, N.157 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain A: Y.109, P.111, G.112 Ligand excluded by PLIP SO4.9: 4 residues within 4Å: Chain A: I.117, T.118, E.119, D.120 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain A: N.37, D.38, T.39, K.41 Ligand excluded by PLIP SO4.11: 5 residues within 4Å: Chain A: P.111, G.158, C.159 Chain B: P.111 Ligands: SO4.25 Ligand excluded by PLIP SO4.12: 1 residues within 4Å: Chain A: S.122 Ligand excluded by PLIP SO4.15: 6 residues within 4Å: Chain B: T.132, D.133, S.134, K.136, T.173, T.174 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain B: K.91, K.123, R.124, R.144 Ligand excluded by PLIP SO4.17: 2 residues within 4Å: Chain B: R.177, Q.179 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain B: K.91, R.124, M.163 Ligand excluded by PLIP SO4.19: 3 residues within 4Å: Chain A: N.101 Chain B: R.35, R.44 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain B: G.125, P.126, R.177 Ligand excluded by PLIP SO4.21: 2 residues within 4Å: Chain B: R.129, N.157 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain B: Y.109, P.111, G.112 Ligand excluded by PLIP SO4.23: 4 residues within 4Å: Chain B: I.117, T.118, E.119, D.120 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain B: N.37, D.38, T.39, K.41 Ligand excluded by PLIP SO4.25: 5 residues within 4Å: Chain A: P.111 Chain B: P.111, G.158, C.159 Ligands: SO4.11 Ligand excluded by PLIP SO4.26: 1 residues within 4Å: Chain B: S.122 Ligand excluded by PLIP

4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.13: 6 residues within 4Å: Chain A: Y.36, T.39, W.40, W.62, K.83, R.86 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.40, A:R.86, A:R.86 MES.14: 10 residues within 4Å: Chain A: I.13, L.28, S.29, K.51 Chain B: G.15, T.16, A.17, V.24, S.26, W.31 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.26 MES.27: 6 residues within 4Å: Chain B: Y.36, T.39, W.40, W.62, K.83, R.86 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.40, B:R.86, B:R.86 MES.28: 10 residues within 4Å: Chain A: G.15, T.16, A.17, V.24, S.26, W.31 Chain B: I.13, L.28, S.29, K.51 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Poonsiri, T. et al., Structural Study of the C-Terminal Domain of Nonstructural Protein 1 from Japanese Encephalitis Virus. J. Virol. (2018)

Release Date

2018-01-24

Peptides

Genome polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Genome polyprotein