SMTL ID : 5o1y.1

Structure of Nrd1 RNA binding domain in complex with RNA (GUAA)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

1 x G- U- A- A: RNA (5'-R(*GP*UP*AP*A)-3')(Non-covalent)

G-U-A-A.1: 21 residues within 4Å: Chain A: T.52, F.54, G.56, G.57, I.81, R.86, K.87, H.88, F.90, R.115, R.117, W.118, G.119, V.120, G.121, R.125, Y.130, I.174, V.176 Ligands: EDO.3, TRS.4 Protein-ligand interaction information (PLIP) not available

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: P.19, D.20 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.20 EDO.3: 5 residues within 4Å: Chain A: R.86, H.88 Ligands: G-U-A-A.1, G-U-A-A.1, G-U-A-A.1 No protein-ligand interaction detected (PLIP)

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.4: 3 residues within 4Å: Chain A: R.115, R.117 Ligands: G-U-A-A.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Franco-Echevarria, E. et al., The structure of transcription termination factor Nrd1 reveals an original mode for GUAA recognition. Nucleic Acids Res. (2017)

Release Date

2017-08-02

Peptides

Protein NRD1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein NRD1

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