SMTL ID : 5o23.1 (1 other biounit)

Crystal structure of WNK3 kinase domain in a monophosphorylated apo state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.16, Q.73, R.79 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.73 Salt bridges: A:R.16, A:R.79 SO4.2: 5 residues within 4Å: Chain A: G.27, A.28, F.29, K.30, I.181 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:F.29, A:K.30 Water bridges: A:A.28, A:K.30, A:K.30 Salt bridges: A:K.30

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: K.178, M.187, Y.192 Ligands: EDO.4 No protein-ligand interaction detected (PLIP) EDO.4: 4 residues within 4Å: Chain A: Y.192, E.193, E.194 Ligands: EDO.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.192 EDO.5: 4 residues within 4Å: Chain A: K.178, S.179, V.180, G.182 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.180, A:G.182 EDO.6: 6 residues within 4Å: Chain A: Y.219, V.232, G.235, K.237, I.257, Q.259 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.232 Water bridges: A:K.237, A:Q.259 EDO.7: 4 residues within 4Å: Chain A: S.175, F.176, S.179 Ligands: EDO.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.179 EDO.8: 6 residues within 4Å: Chain A: R.52, K.53, T.55, E.58, S.175 Ligands: EDO.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.52, A:T.55, A:E.58, A:F.176 EDO.9: 5 residues within 4Å: Chain A: H.136, E.198, V.202, S.266, I.267 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.136, A:I.267 EDO.10: 5 residues within 4Å: Chain A: S.14, R.16, F.17, Y.81, D.82 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.14, A:S.14, A:R.16, A:Y.81 Water bridges: A:R.79 EDO.11: 8 residues within 4Å: Chain A: R.26, G.27, A.28, F.29, K.30, T.31, Q.50, K.53 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.26, A:G.27, A:T.31, A:Q.50 Water bridges: A:R.52 EDO.12: 7 residues within 4Å: Chain A: I.142, I.143, H.144, R.145, L.166, A.169, T.170 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.144, A:T.170 Water bridges: A:I.143 EDO.13: 7 residues within 4Å: Chain A: R.145, D.146, L.147, T.183, F.186, M.191, A.204 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.147, A:T.183 Water bridges: A:T.183, A:F.186, A:A.204 EDO.14: 5 residues within 4Å: Chain A: V.32, A.45, E.99, L.100, M.101 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.101, A:M.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pinkas, D.M. et al., Crystal structure of WNK3 kinase domain in a monophosphorylated apo state. To Be Published

Release Date

2017-06-28

Peptides

Serine/threonine-protein kinase WNK3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase WNK3

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