SMTL ID : 5o24.1

Lytic transglycosylase in action

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

3 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)

NHE.1: 8 residues within 4Å: Chain A: A.314, T.315, G.316, R.317, E.414, T.416, D.417, R.425 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.315, A:R.317 Water bridges: A:E.414 Salt bridges: A:R.317, A:R.425 NHE.2: 6 residues within 4Å: Chain A: F.401, I.427, S.428, P.429, K.431, L.572 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.428, A:K.431 NHE.3: 6 residues within 4Å: Chain A: P.27, E.28, K.356, V.360, Q.363, H.403 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.360 Hydrogen bonds: A:E.28 Salt bridges: A:K.356

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Williams, A.H. et al., A step-by-stepin crystalloguide to bond cleavage and 1,6-anhydro-sugar product synthesis by a peptidoglycan-degrading lytic transglycosylase. J. Biol. Chem. (2018)

Release Date

2018-03-14

Peptides

Transglycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transglycosylase