SMTL ID : 5o27.1

Crystal structure of murine neuroglobin mutant V140W under 30 bar xenon pressure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 15 residues within 4Å: Chain A: L.39, F.40, Y.42, H.62, K.65, V.66, V.69, Y.86, L.90, K.93, H.94, V.97, V.107, W.138 Ligands: XE.10 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:L.39, A:F.40, A:F.40, A:Y.42, A:K.65, A:K.65, A:V.66, A:V.69, A:V.69, A:L.90, A:V.107, A:W.138, A:W.138 Hydrogen bonds: A:Y.42 Salt bridges: A:K.65 Metal complexes: A:H.62, A:H.94

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: S.17, P.18, L.19, E.20, R.64 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.19, A:E.20 Salt bridges: A:R.64

8 x XE: XENON(Non-covalent)

XE.3: 1 residues within 4Å: Chain A: K.65 No protein-ligand interaction detected (PLIP) XE.4: 6 residues within 4Å: Chain A: F.26, A.27, F.30, S.53, L.54 Ligands: XE.7 No protein-ligand interaction detected (PLIP) XE.5: 1 residues within 4Å: Chain A: W.138 No protein-ligand interaction detected (PLIP) XE.6: 3 residues within 4Å: Chain A: I.70, V.107, Y.135 No protein-ligand interaction detected (PLIP) XE.7: 3 residues within 4Å: Chain A: P.50, L.54 Ligands: XE.4 No protein-ligand interaction detected (PLIP) XE.8: 2 residues within 4Å: Chain A: M.67, D.71 No protein-ligand interaction detected (PLIP) XE.9: 2 residues within 4Å: Chain A: P.18, R.64 No protein-ligand interaction detected (PLIP) XE.10: 3 residues within 4Å: Chain A: F.104, M.142 Ligands: HEM.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Colloc'h, N. et al., Mapping Hydrophobic Tunnels and Cavities in Neuroglobin with Noble Gas under Pressure. Biophys. J. (2017)

Release Date

2017-11-15

Peptides

Neuroglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neuroglobin

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