SMTL ID : 5o38.1

Human Brd2(BD2) mutant in free form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x 9JB: 3-[(2~{R})-2-oxidanylpropoxy]-2-[[(2~{R})-2-oxidanylpropoxy]methyl]-2-[[(2~{S})-2-oxidanylpropoxy]methyl]propan-1-ol(Non-covalent)

9JB.1: 14 residues within 4Å: Chain A: W.29, P.30, F.31, V.35, L.40, V.42, Y.45, C.84, Y.87, N.88, H.92, D.93, V.94, M.97 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.31, A:L.40, A:D.93 Hydrogen bonds: A:N.88, A:N.88 Water bridges: A:D.93

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: R.78 Ligand excluded by PLIP

1 x DQW: (2~{S})-1-[(2~{S})-2-oxidanylpropoxy]propan-2-ol(Non-covalent)

DQW.3: 6 residues within 4Å: Chain A: Y.85, R.99, Q.102, D.103, E.106, F.107 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.99, A:E.106, A:F.107 Hydrogen bonds: A:Q.102, A:D.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Runcie, A.C. et al., Optimization of a "bump-and-hole" approach to allele-selective BET bromodomain inhibition. Chem Sci (2018)

Release Date

2018-02-14

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2

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