SMTL ID : 5o5c.1 (2 other biounits)

The crystal structure of DfoJ, the desferrioxamine biosynthetic pathway lysine decarboxylase from the fire blight disease pathogen Erwinia amylovora

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)(Non-covalent)

PLP.1: 17 residues within 4Å: Chain A: L.110, G.169, G.170, T.171, N.174, H.216, S.218, T.269, G.271, T.273, D.298, A.300, D.327, H.329, K.330 Chain B: T.379, T.380 13 PLIP interactions: 10 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:T.269, A:K.330 Hydrogen bonds: A:G.170, A:T.171, A:T.171, B:T.379, B:T.380, B:T.380 Water bridges: A:S.168, A:Q.172 Salt bridges: A:H.329, A:K.330 pi-Stacking: A:H.216 PLP.2: 16 residues within 4Å: Chain A: T.379, T.380 Chain B: L.110, G.169, G.170, T.171, N.174, H.216, S.218, G.271, T.273, D.298, A.300, D.327, H.329, K.330 15 PLIP interactions: 11 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:A.300 Hydrogen bonds: B:G.170, B:T.171, B:T.171, B:N.174, B:D.327, B:K.330, A:T.380, A:T.380 Water bridges: B:Q.172, A:T.379, A:T.379 Salt bridges: B:H.329, B:K.330 pi-Stacking: B:H.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Salomone-Stagni, M. et al., A complete structural characterization of the desferrioxamine E biosynthetic pathway from the fire blight pathogen Erwinia amylovora. J. Struct. Biol. (2018)

Release Date

2018-02-28

Peptides

Putative decarboxylase involved in desferrioxamine biosynthesis: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative decarboxylase involved in desferrioxamine biosynthesis

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