SMTL ID : 5o5q.1

X-ray crystal structure of RapZ from Escherichia coli (P3221 space group)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

homo-tetramer

Ligands

15 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: R.20, S.21, G.22, S.23, G.24, K.25, S.26 Ligand excluded by PLIP SO4.2: 7 residues within 4Å: Chain A: N.199, C.258, T.259, G.260, H.263, R.264 Ligands: SO4.4 Ligand excluded by PLIP SO4.3: 5 residues within 4Å: Chain A: R.195, N.199, W.202, R.264 Chain B: R.162 Ligand excluded by PLIP SO4.4: 6 residues within 4Å: Chain A: N.199, P.200, H.201, R.207, H.263 Ligands: SO4.2 Ligand excluded by PLIP SO4.5: 7 residues within 4Å: Chain B: R.20, S.21, G.22, S.23, G.24, K.25, S.26 Ligand excluded by PLIP SO4.6: 6 residues within 4Å: Chain B: R.112, L.113, H.114, N.120 Chain D: Y.231, R.234 Ligand excluded by PLIP SO4.7: 7 residues within 4Å: Chain B: N.199, H.201, C.258, T.259, G.260, H.263, R.264 Ligand excluded by PLIP SO4.8: 6 residues within 4Å: Chain A: Y.231, R.234 Chain C: R.112, L.113, H.114, N.120 Ligand excluded by PLIP SO4.9: 7 residues within 4Å: Chain C: R.20, S.21, G.22, S.23, G.24, K.25, S.26 Ligand excluded by PLIP SO4.10: 5 residues within 4Å: Chain C: G.22, G.24, R.106, V.152 Ligands: SO4.13 Ligand excluded by PLIP SO4.11: 2 residues within 4Å: Chain C: S.108, R.111 Ligand excluded by PLIP SO4.12: 7 residues within 4Å: Chain C: N.199, C.258, T.259, G.260, G.261, H.263, R.264 Ligand excluded by PLIP SO4.13: 1 residues within 4Å: Ligands: SO4.10 Ligand excluded by PLIP SO4.14: 6 residues within 4Å: Chain D: N.199, H.201, T.259, G.260, H.263, R.264 Ligand excluded by PLIP SO4.15: 7 residues within 4Å: Chain D: R.20, S.21, G.22, S.23, G.24, K.25, S.26 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gonzalez, G.M. et al., Structural insights into RapZ-mediated regulation of bacterial amino-sugar metabolism. Nucleic Acids Res. (2017)

Release Date

2017-08-30

Peptides

RNase adapter protein RapZ: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
C

RNase adapter protein RapZ