SMTL ID : 5o5x.1 (1 other biounit)

Crystal structure of Thermococcus litoralis ADP-dependent glucokinase (GK)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.374, I.375, V.376, A.419 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.376 Water bridges: A:S.412, A:A.416 SO4.2: 2 residues within 4Å: Chain A: E.247, R.287 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.286, A:R.287 SO4.3: 3 residues within 4Å: Chain A: K.54, R.55, E.58 4 PLIP interactions: 4 interactions with chain A Water bridges: A:D.51, A:K.54 Salt bridges: A:K.54, A:R.55

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: N.40, D.42, E.96, H.184, I.207 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.42, A:E.96, A:H.184 Water bridges: A:D.42, A:G.120, A:G.120 GOL.5: 3 residues within 4Å: Chain A: R.109, G.112, W.113 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.109, A:R.109, A:W.113, A:W.113 GOL.6: 2 residues within 4Å: Chain A: K.13, R.14 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.14 GOL.7: 6 residues within 4Å: Chain A: I.334, N.338, L.360, R.366, L.368, F.453 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.338 Water bridges: A:L.368 GOL.8: 10 residues within 4Å: Chain A: Q.121, E.279, A.281, G.303, L.304, N.305, E.308, H.352, G.386, D.387 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.121, A:E.308, A:D.387

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Herrera-Morande, A. et al., Protein topology determines substrate-binding mechanism in homologous enzymes. Biochim Biophys Acta Gen Subj (2018)

Release Date

2018-10-24

Peptides

ADP-dependent glucokinase,ADP-dependent glucokinase,ADP-dependent glucokinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ADP-dependent glucokinase,ADP-dependent glucokinase,ADP-dependent glucokinase

Related Entries With Identical Sequence