SMTL ID : 5o6g.3 (2 other biounits)

Structures and dynamics of mesophilic variants from the homing endonuclease I-DmoI

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.22, A.117 Chain B: A.14 Chain C: C.16 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.22, A:D.22, A:A.117, H2O.1, H2O.1 MN.2: 7 residues within 4Å: Chain A: I.20, G.21, E.118, N.130 Chain B: G.15 Chain C: A.14, C.15 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.21, A:E.118, A:E.118, H2O.1, H2O.1

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: N.132 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alba, J. et al., Structure and dynamics of mesophilic variants from the homing endonuclease I-DmoI. J. Comput. Aided Mol. Des. (2017)

Release Date

2017-12-06

Peptides

Homing endonuclease I-DmoI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

Homing endonuclease I-DmoI

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