SMTL ID : 5o6r.1

Structure of beta-phosphoglucomutase D10N mutant in complex with glucose-1-phosphate and aluminium tetrafluoride

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 5 residues within 4Å: Chain A: D.8, N.10, E.169, D.170 Ligands: ALF.3 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.8, A:N.10, A:D.170, H2O.2, H2O.7 MG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x XGP: 1-O-phosphono-beta-D-glucopyranose(Non-covalent)

XGP.2: 13 residues within 4Å: Chain A: N.10, H.20, W.24, L.44, G.46, V.47, R.49, S.52, K.76, S.116, K.117, N.118 Ligands: ALF.3 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:N.10, A:W.24, A:R.49, A:S.52, A:S.114, A:S.116, A:K.117, A:N.118, A:N.118 Water bridges: A:W.24, A:G.46, A:G.46, A:G.46, A:K.76, A:K.76, A:S.116 Salt bridges: A:H.20, A:H.20, A:R.49, A:K.76

1 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)

ALF.3: 11 residues within 4Å: Chain A: D.8, L.9, N.10, G.46, A.113, S.114, A.115, K.145, E.169 Ligands: MG.1, XGP.2 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.8, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnson, L.A. et al., van der Waals Contact between Nucleophile and Transferring Phosphorus Is Insufficient To Achieve Enzyme Transition-State Architecture. Acs Catalysis (2018)

Release Date

2018-06-20

Peptides

Beta-phosphoglucomutase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-phosphoglucomutase

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