SMTL ID : 5o79.1

Klebsiella pneumoniae OmpK36

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-trimer

Ligands

9 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.1: 5 residues within 4Å: Chain A: G.19, H.21, L.338 Chain C: Y.91, Y.150 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:G.19 Water bridges: C:G.152 C8E.3: 5 residues within 4Å: Chain B: I.230, A.261, Q.262, Y.263, P.271 No protein-ligand interaction detected (PLIP) C8E.4: 4 residues within 4Å: Chain A: Y.91 Chain B: H.21, L.338, G.339 No protein-ligand interaction detected (PLIP) C8E.5: 2 residues within 4Å: Chain B: A.300, T.310 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:A.300, B:T.310 C8E.6: 2 residues within 4Å: Chain B: V.336 Ligands: C8E.7 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:V.336 C8E.7: 3 residues within 4Å: Chain B: V.298, Y.314 Ligands: C8E.6 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:Y.314 C8E.8: 3 residues within 4Å: Chain B: Y.219, G.221, Y.236 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.219, B:Y.236 C8E.10: 4 residues within 4Å: Chain B: Y.91 Chain C: G.19, H.21, L.338 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.19 C8E.11: 2 residues within 4Å: Chain C: V.312, Y.314 No protein-ligand interaction detected (PLIP)

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: R.212, N.241, N.252 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:R.212, H2O.2, H2O.6, H2O.7 MG.9: 3 residues within 4Å: Chain B: R.212, N.241, N.252 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:R.212, H2O.12, H2O.14, H2O.15 MG.12: 3 residues within 4Å: Chain C: R.212, N.241, N.252 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:R.212, H2O.19, H2O.23, H2O.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Acosta-Gutierrez, S. et al., Getting Drugs into Gram-Negative Bacteria: Rational Rules for Permeation through General Porins. Acs Infect Dis. (2018)

Release Date

2018-06-20

Peptides

OmpK36: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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OmpK36

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