SMTL ID : 5o80.1 (1 other biounit)

Crystal Structure of R67A Mutant of alpha-L-arabinofuranosidase Ara51 from Clostridium thermocellum in complex with L-Arabinofuranose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.92 Å

Oligo State

homo-trimer

Ligands

3 x AHR: alpha-L-arabinofuranose(Non-covalent)

AHR.1: 10 residues within 4Å: Chain A: F.24, E.26, G.70, N.71, W.96, N.171, Y.243, E.291, W.295, Q.351 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.26, A:N.71, A:N.171, A:Y.243, A:Q.351 AHR.3: 11 residues within 4Å: Chain B: F.24, E.26, G.70, N.71, W.96, N.171, Y.243, E.291, W.295, Q.351, I.356 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.26, B:N.71, B:N.171, B:Y.243, B:Q.351 Water bridges: B:N.71 AHR.5: 12 residues within 4Å: Chain C: F.24, E.26, G.70, N.71, W.96, N.171, E.172, Y.243, E.291, W.295, L.318, Q.351 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:E.26, C:N.71, C:N.171, C:Q.351 Water bridges: C:E.172, C:E.172

3 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)

DIO.2: 9 residues within 4Å: Chain A: G.69, G.70, C.168, G.170, N.171, E.172, H.241, D.290, E.291 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.172 DIO.4: 11 residues within 4Å: Chain B: G.69, G.70, C.168, G.170, N.171, E.172, C.210, S.239, H.241, D.290, E.291 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.172, B:E.291 DIO.6: 9 residues within 4Å: Chain C: G.69, G.70, A.123, C.168, G.170, N.171, H.241, D.290, E.291 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pennec, A. et al., To be announced. To Be Published

Release Date

2018-06-27

Peptides

Intracellular exo-alpha-(1->5)-L-arabinofuranosidase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

Intracellular exo-alpha-(1->5)-L-arabinofuranosidase

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