SMTL ID : 5o84.1

Glutathione S-transferase Tau 23 (partially oxidized)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

homo-dimer

Ligands

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 5 residues within 4Å: Chain A: Y.13, R.16, P.53, E.64, S.65 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.16, A:S.65 Water bridges: A:E.64, A:I.66 FMT.9: 5 residues within 4Å: Chain B: Y.13, R.16, P.53, E.64, S.65 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.16, B:S.65 Water bridges: B:E.64, B:I.66

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: Y.159, S.160, L.188, L.197, P.198, D.199, S.200 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.198, A:S.200 Water bridges: A:D.199, A:S.200 EDO.6: 6 residues within 4Å: Chain A: M.45, P.61, C.63 Chain B: Q.92, F.95 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.92 EDO.7: 8 residues within 4Å: Chain A: M.45, I.48, P.61, C.63 Chain B: Q.92, F.95, W.96 Ligands: EDO.6 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.92, B:Q.92 EDO.10: 7 residues within 4Å: Chain B: Y.159, S.160, L.188, L.197, P.198, D.199, S.200 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:P.198, B:S.200 Water bridges: B:D.199, B:S.200 EDO.14: 6 residues within 4Å: Chain A: Q.92, F.95 Chain B: M.45, P.61, C.63 Ligands: EDO.15 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.92 EDO.15: 8 residues within 4Å: Chain A: Q.92, F.95, W.96 Chain B: M.45, I.48, P.61, C.63 Ligands: EDO.14 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.92, A:Q.92

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 7 residues within 4Å: Chain A: Y.8, A.10, S.11, M.12, C.108, W.112, W.161 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.112 ACT.8: 6 residues within 4Å: Chain A: Y.159, F.162, R.163, V.174, M.181, S.200 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.200 Salt bridges: A:R.163 ACT.11: 7 residues within 4Å: Chain B: Y.8, A.10, S.11, M.12, C.108, W.112, W.161 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:W.112 ACT.16: 6 residues within 4Å: Chain B: Y.159, F.162, R.163, V.174, M.181, S.200 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.200 Salt bridges: B:R.163

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.12: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain A: E.166, E.167, N.170 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.167 GOL.13: 3 residues within 4Å: Chain B: E.166, E.167, N.170 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tossounian, M.A. et al., Disulfide bond formation protects Arabidopsis thaliana glutathione transferase tau 23 from oxidative damage. Biochim. Biophys. Acta (2018)

Release Date

2017-10-25

Peptides

Glutathione S-transferase U23: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glutathione S-transferase U23