SMTL ID : 5oas.1

Crystal structure of malate synthase G from Pseudomonas aeruginosa in apo form.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: V.283, T.350, E.361, H.716 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.283, A:E.361, A:H.716 Water bridges: A:T.350, A:R.717, A:R.720 GOL.2: 4 residues within 4Å: Chain A: F.174, L.554, H.555, K.558 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.558 GOL.3: 10 residues within 4Å: Chain A: E.111, R.137, H.335, R.337, S.338, L.339, K.387, N.388, R.390 Ligands: MG.21 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.137, A:H.335, A:R.390, A:R.390 Water bridges: A:D.109, A:R.337, A:R.337, A:S.338 GOL.4: 7 residues within 4Å: Chain A: D.61, Q.64, H.470, T.704, Q.706, P.707, N.708 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.704, A:N.708 Water bridges: A:R.60, A:N.708

15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 2 residues within 4Å: Chain A: R.114, F.562 No protein-ligand interaction detected (PLIP) EDO.6: 5 residues within 4Å: Chain A: V.10, G.11, D.36, W.39, T.40 No protein-ligand interaction detected (PLIP) EDO.7: 4 residues within 4Å: Chain A: L.380, N.381, L.423 Ligands: EDO.12 No protein-ligand interaction detected (PLIP) EDO.8: 7 residues within 4Å: Chain A: E.435, G.460, F.461, L.462, D.463, A.636 Ligands: MG.20 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.461, A:L.462, A:D.463, A:D.463 Water bridges: A:R.343 EDO.9: 4 residues within 4Å: Chain A: Y.142, D.143, Y.146, V.253 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.143 EDO.10: 2 residues within 4Å: Chain A: H.335, R.390 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.390 Water bridges: A:H.335 EDO.11: 6 residues within 4Å: Chain A: M.125, N.126, A.127, R.128, N.294, E.305 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:M.125, A:A.127, A:R.128, A:N.294, A:E.305 EDO.12: 8 residues within 4Å: Chain A: T.31, G.32, V.33, I.377, L.421, G.422, L.423 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.32 EDO.13: 4 residues within 4Å: Chain A: N.200, G.201, A.327, D.328 4 PLIP interactions: 4 interactions with chain A Water bridges: A:N.200, A:G.201, A:A.327, A:D.328 EDO.14: 4 residues within 4Å: Chain A: D.284, R.720, K.723, A.724 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.720, A:R.720 EDO.15: 4 residues within 4Å: Chain A: M.125, D.287, R.719, K.723 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.719, A:K.723 Water bridges: A:D.287, A:D.287 EDO.16: 4 residues within 4Å: Chain A: M.516, W.517, A.518, M.519 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.516, A:A.518 EDO.17: 5 residues within 4Å: Chain A: E.97, V.441, N.442, L.443, K.444 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.443, A:K.444 Water bridges: A:A.98, A:A.445 EDO.18: 5 residues within 4Å: Chain A: P.29, G.30, K.300, H.378, N.383 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.383, A:N.383 EDO.19: 4 residues within 4Å: Chain A: A.1, R.2, M.4, A.724 No protein-ligand interaction detected (PLIP)

2 x MG: MAGNESIUM ION(Non-covalent)

MG.20: 8 residues within 4Å: Chain A: E.277, D.278, R.343, P.399, K.400, E.435, D.463 Ligands: EDO.8 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.277, A:E.435 MG.21: 6 residues within 4Å: Chain A: D.321, H.335, G.336, R.337, R.390 Ligands: GOL.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.321

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McVey, A.C. et al., Structural and Functional Characterization of Malate Synthase G from Opportunistic Pathogen Pseudomonas aeruginosa. Biochemistry (2017)

Release Date

2017-10-18

Peptides

Malate synthase G: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Malate synthase G