SMTL ID : 5obb.1

Structure of a modified mouse H chain ferritin with a lanthanide binding motif in complex with Terbium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-24-mer

Ligands

32 x TB: TERBIUM(III) ION(Non-covalent)

TB.1: 5 residues within 4Å: Chain A: D.132, E.135 Chain B: D.132, E.135 Chain C: E.135 Ligand excluded by PLIP TB.2: 4 residues within 4Å: Chain A: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP TB.3: 5 residues within 4Å: Chain B: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP TB.4: 4 residues within 4Å: Chain C: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP TB.5: 5 residues within 4Å: Chain D: D.132, E.135 Chain E: D.132, E.135 Chain F: E.135 Ligand excluded by PLIP TB.6: 4 residues within 4Å: Chain D: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP TB.7: 4 residues within 4Å: Chain E: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP TB.8: 4 residues within 4Å: Chain F: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP TB.9: 6 residues within 4Å: Chain G: D.132, E.135 Chain H: D.132, E.135 Chain I: D.132, E.135 Ligand excluded by PLIP TB.10: 4 residues within 4Å: Chain G: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP TB.11: 4 residues within 4Å: Chain H: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP TB.12: 4 residues within 4Å: Chain I: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP TB.13: 6 residues within 4Å: Chain J: D.132, E.135 Chain K: D.132, E.135 Chain L: D.132, E.135 Ligand excluded by PLIP TB.14: 4 residues within 4Å: Chain J: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP TB.15: 4 residues within 4Å: Chain K: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP TB.16: 4 residues within 4Å: Chain L: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP TB.17: 4 residues within 4Å: Chain M: D.132, E.135 Chain N: E.135 Chain O: E.135 Ligand excluded by PLIP TB.18: 4 residues within 4Å: Chain M: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP TB.19: 4 residues within 4Å: Chain N: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP TB.20: 4 residues within 4Å: Chain O: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP TB.21: 3 residues within 4Å: Chain P: E.135 Chain Q: E.135 Chain R: E.135 Ligand excluded by PLIP TB.22: 4 residues within 4Å: Chain P: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP TB.23: 4 residues within 4Å: Chain Q: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP TB.24: 4 residues within 4Å: Chain R: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP TB.25: 4 residues within 4Å: Chain S: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP TB.26: 5 residues within 4Å: Chain S: D.132, E.135 Chain T: D.132, E.135 Chain U: E.135 Ligand excluded by PLIP TB.27: 4 residues within 4Å: Chain T: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP TB.28: 4 residues within 4Å: Chain U: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP TB.29: 5 residues within 4Å: Chain V: D.132, E.135 Chain W: D.132, E.135 Chain X: E.135 Ligand excluded by PLIP TB.30: 6 residues within 4Å: Chain V: E.28, E.63, H.66, E.108, V.111, Q.142 Ligand excluded by PLIP TB.31: 4 residues within 4Å: Chain W: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP TB.32: 4 residues within 4Å: Chain X: E.28, E.63, H.66, Q.142 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Calisti, L. et al., Engineered ferritin for lanthanide binding. PLoS ONE (2018)

Release Date

2018-07-25

Peptides

Ferritin heavy chain: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Ferritin heavy chain

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