SMTL ID : 5oc4.1

Crystal structure of human tRNA-dihydrouridine(20) synthase dsRBD R361A-R362A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: E.101, G.102, R.103 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: K.17, S.63, Q.74, S.75, T.76, L.77, W.78 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.17, A:S.63, A:Q.74, A:S.75, A:L.77 GOL.3: 4 residues within 4Å: Chain A: I.16, Y.73, S.96, Q.97 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.73

1 x CAC: CACODYLATE ION(Non-covalent)

CAC.4: 4 residues within 4Å: Chain A: Y.51, E.52, T.53, K.82 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.53, A:T.53 Water bridges: A:T.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bou-Nader, C. et al., Molecular basis for transfer RNA recognition by the double-stranded RNA-binding domain of human dihydrouridine synthase 2. Nucleic Acids Res. (2019)

Release Date

2018-12-26

Peptides

tRNA-dihydrouridine(20) synthase [NAD(P)+]-like: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

tRNA-dihydrouridine(20) synthase [NAD(P)+]-like