SMTL ID : 5oc9.1

Crystal Structure of human TMEM16K / Anoctamin 10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

7 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: N.444, Q.445, E.448, E.500, E.529 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.448, A:E.500, A:E.529, A:E.529 CA.2: 6 residues within 4Å: Chain A: Y.211, E.448, D.497, E.500, E.529, D.533 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.448, A:D.497, A:E.529, A:D.533, A:D.533 CA.3: 4 residues within 4Å: Chain A: E.259, A.610, I.613, D.615 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.259, A:A.610, A:I.613, A:D.615 CA.13: 5 residues within 4Å: Chain B: N.444, Q.445, E.448, E.500, E.529 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.448, B:E.500, B:E.529, B:E.529, H2O.2 CA.14: 6 residues within 4Å: Chain B: Y.211, E.448, D.497, E.500, E.529, D.533 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.448, B:D.497, B:E.529, B:D.533, B:D.533 CA.15: 4 residues within 4Å: Chain B: E.259, A.610, I.613, D.615 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.259, B:A.610, B:I.613, B:D.615, H2O.2 CA.16: 4 residues within 4Å: Chain A: A.589 Chain B: E.586, K.588, A.589 No protein-ligand interaction detected (PLIP)

18 x 79M: (2R)-2,3-dihydroxypropyl (7Z)-hexadec-7-enoate(Non-covalent)

79M.4: 8 residues within 4Å: Chain A: I.223, P.224, V.227, I.228, D.241, K.242, I.245 Ligands: 79M.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.223, A:P.224, A:V.227, A:I.245 Salt bridges: A:K.242 79M.5: 4 residues within 4Å: Chain A: D.241, I.245 Ligands: 79M.4, 79M.6 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.245 79M.6: 6 residues within 4Å: Chain A: Y.240, D.241, V.244, I.245, S.248 Ligands: 79M.5 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.241, A:V.244, A:I.245 79M.7: 8 residues within 4Å: Chain A: Y.240, V.244, A.247, S.248, L.251, I.574, V.598, L.602 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.244, A:A.247, A:L.251, A:I.574, A:V.598, A:L.602 79M.8: 12 residues within 4Å: Chain A: T.255, E.560, S.563, V.564, V.568, L.603, K.606, F.607, A.610 Chain B: H.600 Ligands: 79M.9, 79M.21 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.564, A:V.564, A:V.568, A:L.603 Hydrogen bonds: A:T.255, A:S.563 Water bridges: A:E.560 79M.9: 8 residues within 4Å: Chain A: L.557, E.560, T.561, V.564 Chain B: A.604, F.607, I.608 Ligands: 79M.8 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:T.561, B:A.604, B:F.607, B:I.608 79M.10: 10 residues within 4Å: Chain A: I.314, C.323, L.326, Y.327, L.330, E.388, H.399, L.402, K.403, V.406 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.326, A:L.326, A:L.330 Hydrogen bonds: A:E.388, A:K.403 79M.11: 9 residues within 4Å: Chain A: L.402, V.406, F.409, F.502, L.557, A.558, T.561, I.565 Chain B: F.611 9 PLIP interactions: 2 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:F.611, B:F.611, A:V.406, A:F.409, A:F.409, A:F.502, A:L.557, A:T.561, A:I.565 79M.12: 8 residues within 4Å: Chain A: F.321, C.325, F.328, M.373, L.376, Y.377, A.380, F.407 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.321, A:F.328, A:L.376, A:A.380, A:F.407 79M.17: 10 residues within 4Å: Chain B: V.227, I.228, P.231, Y.232, F.235, W.237, D.241, K.242, I.245 Ligands: 79M.18 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:V.227, B:P.231, B:F.235, B:W.237, B:K.242 Hydrogen bonds: B:D.241, B:K.242 Salt bridges: B:K.242 79M.18: 4 residues within 4Å: Chain B: D.241, I.245 Ligands: 79M.17, 79M.19 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:I.245 79M.19: 7 residues within 4Å: Chain B: Y.240, D.241, V.244, I.245, S.248 Ligands: 79M.18, 79M.20 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:D.241, B:V.244, B:I.245 79M.20: 13 residues within 4Å: Chain B: Y.240, A.247, S.248, L.251, I.574, V.580, V.583, F.584, I.594, V.595, V.598, L.602 Ligands: 79M.19 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:Y.240, B:A.247, B:L.251, B:I.574, B:I.574, B:V.583, B:F.584, B:I.594, B:V.595, B:V.598, B:L.602 79M.21: 12 residues within 4Å: Chain A: A.601, L.603 Chain B: T.255, E.560, S.563, V.564, L.603, K.606, F.607, A.610 Ligands: 79M.8, 79M.22 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.607, A:L.603 Hydrogen bonds: B:T.255, B:S.563, B:K.606 79M.22: 6 residues within 4Å: Chain A: F.607 Chain B: L.557, E.560, T.561, V.564 Ligands: 79M.21 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:T.561, B:V.564 Hydrogen bonds: B:E.560, B:E.560 79M.23: 7 residues within 4Å: Chain B: I.314, V.322, E.388, H.399, L.402, K.403, V.406 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:V.322, B:V.406 Hydrogen bonds: B:E.388, B:H.399, B:K.403 79M.24: 8 residues within 4Å: Chain B: L.402, V.406, F.409, F.502, L.557, A.558, T.561, I.565 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.406, B:F.409, B:F.409, B:F.502, B:L.557, B:T.561, B:I.565 79M.25: 7 residues within 4Å: Chain B: F.321, F.328, M.373, L.376, Y.377, A.380, F.407 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.321, B:F.328, B:L.376, B:A.380, B:F.407

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bushell, S.R. et al., The structural basis of lipid scrambling and inactivation in the endoplasmic reticulum scramblase TMEM16K. Nat Commun (2019)

Release Date

2018-07-25

Peptides

Anoctamin-10: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Anoctamin-10

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