SMTL ID : 5oca.1

PCSK9:Fab Complex with Dextran Sulfate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x TWD- TWA: 2,3,4-tri-O-sulfo-beta-D-altropyranose-(1-6)-2,3-di-O-sulfo-alpha-L-glucopyranose(Non-covalent)

TWD-TWA.1: 7 residues within 4Å: Chain A: R.67, R.71, A.74, Q.75, R.78, P.112, H.113 5 PLIP interactions: 5 interactions with chain A Salt bridges: A:R.67, A:R.67, A:R.71, A:R.71, A:H.113, A:R.71, A:R.78, A:R.78 Hydrogen bonds: A:R.71, A:Q.75

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 7 residues within 4Å: Chain B: A.176, A.178, P.179, V.181, T.183, C.206, D.208 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.183, B:T.183, B:C.206 NA.3: 5 residues within 4Å: Chain B: G.80, V.81, A.87, I.217, G.218 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.217 Water bridges: B:A.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gustafsen, C. et al., Heparan sulfate proteoglycans present PCSK9 to the LDL receptor. Nat Commun (2017)

Release Date

2017-09-20

Peptides

Proprotein convertase subtilisin/kexin type 9: A
Proprotein convertase subtilisin/kexin type 9: B
Fab from LDLR competitive antibody: Heavy chain: C
Fab from LDLR competitive antibody: Light chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
L

Proprotein convertase subtilisin/kexin type 9

Proprotein convertase subtilisin/kexin type 9

Fab from LDLR competitive antibody: Heavy chain

Fab from LDLR competitive antibody: Light chain

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