SMTL ID : 5och.3 (3 other biounits)

The crystal structure of human ABCB8 in an outward-facing state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 12 residues within 4Å: Chain A: Y.372, C.374, Q.399, S.400, G.401, G.402, G.403, K.404, T.405, T.406 Chain B: T.502 Ligands: MG.2 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.135, A:Q.399, A:G.401, A:G.401, A:G.402, A:G.403, A:K.404, A:T.405, A:T.406, A:T.406, B:T.502 Salt bridges: A:K.404 pi-Stacking: A:Y.372, A:Y.372 ADP.4: 13 residues within 4Å: Chain A: T.502 Chain B: Y.372, C.374, V.380, Q.399, S.400, G.401, G.402, G.403, K.404, T.405, T.406 Ligands: MG.5 14 PLIP interactions: 13 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.135, B:Q.399, B:G.401, B:G.401, B:G.402, B:G.403, B:K.404, B:T.405, B:T.406, B:T.406, A:T.502 Salt bridges: B:K.404 pi-Stacking: B:Y.372, B:Y.372

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: T.405, Q.447, D.527, E.528 Ligands: ADP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.405 MG.5: 3 residues within 4Å: Chain B: T.405, Q.447 Ligands: ADP.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.405

2 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.3: 10 residues within 4Å: Chain A: P.194, F.269, S.273, N.274, F.277, Q.313, M.316, L.319, S.320, V.326 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.269, A:F.277, A:M.316, A:L.319, A:L.319, A:V.326 Hydrogen bonds: A:N.274, A:Q.313 Y01.6: 13 residues within 4Å: Chain B: W.25, I.161, P.194, L.202, F.269, S.273, N.274, F.277, Q.313, M.316, L.319, S.320, V.326 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:W.25, B:I.161, B:L.202, B:F.269, B:F.277, B:M.316, B:L.319, B:L.319, B:V.326 Hydrogen bonds: B:N.274

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Faust, B. et al., The crystal structure of human ABCB8 in an outward-facing state. To Be Published

Release Date

2018-07-25

Peptides

ATP-binding cassette sub-family B member 8, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Membrane

We predict this structure to be a membrane protein.
Show / Hide

ATP-binding cassette sub-family B member 8, mitochondrial

Related Entries With Identical Sequence