SMTL ID : 5od0.1

Crystal structure of ACPA E4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: Q.38, K.46, I.59, P.60, R.62, F.63, G.82, D.83 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.38, A:K.46, A:R.62, A:G.82 Water bridges: A:R.62, A:Q.80 GOL.2: 5 residues within 4Å: Chain A: R.30, S.31, A.32, F.33 Chain B: S.103 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.30 GOL.3: 8 residues within 4Å: Chain A: W.92 Chain B: F.34, W.48, S.51, Y.59, I.99, N.105 Ligands: GOL.4 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:W.48, B:S.51 Water bridges: B:Y.59, B:G.102 GOL.4: 6 residues within 4Å: Chain A: W.92 Chain B: Y.59, G.102, S.103, N.105 Ligands: GOL.3 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.59, B:G.102, B:N.105 Water bridges: B:S.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ge, C. et al., Structural Basis of Cross-Reactivity of Anti-Citrullinated Protein Antibodies. Arthritis Rheumatol (2019)

Release Date

2018-07-04

Peptides

Fab fragment of ACPA E4 - Light chain: A
Fab fragment of ACPA E4 - heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

Fab fragment of ACPA E4 - Light chain

Fab fragment of ACPA E4 - heavy chain

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