SMTL ID : 5odz.1

CRYSTAL STRUCTURE OF THE BETA-LACTAMASE OXA-163

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

homo-dimer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: Q.184, L.187, R.197 Chain B: Q.184, L.187, R.197 Ligand excluded by PLIP CL.2: 6 residues within 4Å: Chain A: S.61, S.109, T.200, G.201, Y.202, R.237 Ligand excluded by PLIP CL.6: 6 residues within 4Å: Chain B: M.106, K.107, M.186, T.188, A.198, K.199 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain B: N.39, K.42, N.218 Ligand excluded by PLIP

3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.3: 5 residues within 4Å: Chain A: W.86, Q.89, R.91, W.96, N.97 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:W.96 MG.4: 2 residues within 4Å: Chain A: S.141, G.142 No protein-ligand interaction detected (PLIP) MG.8: 4 residues within 4Å: Chain A: D.217 Chain B: V.83, H.100, N.101 No protein-ligand interaction detected (PLIP)

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.5: 4 residues within 4Å: Chain B: L.74, A.124, R.125, K.128 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.128 Water bridges: B:R.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lund, B.A. et al., Structure, activity and thermostability investigations of OXA-163, OXA-181 and OXA-245 using biochemical analysis, crystal structures and differential scanning calorimetry analysis. Acta Crystallogr F Struct Biol Commun (2017)

Release Date

2017-10-18

Peptides

Beta-lactamase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Beta-lactamase