SMTL ID : 5oea.4 (5 other biounits)

Structure of large terminase from the thermophilic bacteriophage D6E in complex with ATP-gamma-S (Crystal form 3)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.1: 9 residues within 4Å: Chain A: I.46, R.47, A.48, G.49, K.50, T.51, I.52, N.174 Ligands: MG.2 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:R.47, A:A.48, A:G.49, A:K.50, A:T.51, A:T.51, A:I.52, A:N.174 Water bridges: A:T.51, A:N.172 Salt bridges: A:K.50

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.51, D.145 Ligands: AGS.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.51, H2O.1, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, R.G. et al., Structure of the large terminase from a hyperthermophilic virus reveals a unique mechanism for oligomerization and ATP hydrolysis. Nucleic Acids Res. (2017)

Release Date

2017-10-11

Peptides

Large subunit terminase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Large subunit terminase

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