SMTL ID : 5oec.1

Human Rab32 (18-201):GDP in complex with Salmonella GtgE (21-214) C45A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 19 residues within 4Å: Chain B: E.15, L.16, G.17, V.18, G.19, K.20, T.21, S.22, F.32, S.33, Q.34, E.68, N.125, K.126, D.128, S.156, A.157, K.158 Ligands: MG.2 21 PLIP interactions: 21 interactions with chain B Hydrogen bonds: B:G.17, B:V.18, B:G.19, B:K.20, B:T.21, B:S.22, B:S.22, B:S.33, B:Q.34, B:E.68, B:E.68, B:N.125, B:K.126, B:S.156, B:A.157, B:K.158 Water bridges: B:K.20 Salt bridges: B:K.20, B:D.128 pi-Stacking: B:F.32, B:F.32

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain B: T.21, D.63, E.68 Ligands: GDP.1 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:T.21, H2O.2, H2O.2, H2O.2, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wachtel, R. et al., The protease GtgE from Salmonella exclusively targets inactive Rab GTPases. Nat Commun (2018)

Release Date

2018-01-10

Peptides

GtgE: A
Ras-related protein Rab-32: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GtgE

Ras-related protein Rab-32