SMTL ID : 5oes.1 (2 other biounits)

The structure of a glutathione synthetase (StGSS1) from Solanum tuberosum in ADP and y-EC bound closed conformation.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.48 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: M.141, I.152, E.153, K.318, V.370, K.372, N.381, Y.383, M.408, Q.409, R.410, I.411, E.434, K.461 Ligands: MG.4 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:E.153, A:N.381, A:Q.409, A:I.411, A:E.434, A:K.461 Salt bridges: A:K.318, A:K.318, A:K.372 ADP.5: 14 residues within 4Å: Chain B: M.141, I.152, E.153, K.318, V.370, K.372, N.381, Y.383, M.408, Q.409, R.410, I.411, E.434, K.461 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:E.153, B:N.381, B:Y.383, B:Q.409, B:I.411, B:E.434, B:E.434, B:E.434, B:K.461 Salt bridges: B:K.318, B:K.318, B:K.372

2 x 3GC: GAMMA-GLUTAMYLCYSTEINE(Non-covalent)

3GC.2: 12 residues within 4Å: Chain A: R.137, N.155, I.157, S.158, S.159, S.160, Q.222, E.225, N.227, Q.231, R.279, Y.282 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:N.155, A:S.158, A:S.160, A:S.160, A:E.225, A:N.227, A:Q.231, A:R.279, A:Y.282 Water bridges: A:E.225, A:E.225 Salt bridges: A:R.137, A:R.279, A:R.459 3GC.6: 11 residues within 4Å: Chain B: R.137, N.155, I.157, S.158, S.160, Q.222, E.225, N.227, Q.231, R.279, Y.282 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.158, B:S.160, B:S.160, B:E.225, B:N.227, B:Q.231 Salt bridges: B:R.137, B:R.279, B:R.459

3 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: L.154, G.316 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:L.154, A:G.316, H2O.3 MG.4: 5 residues within 4Å: Chain A: D.139, E.153, E.434, R.459 Ligands: ADP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.153, A:E.434 MG.7: 3 residues within 4Å: Chain B: L.154, N.155, G.316 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:L.154, B:G.316, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lilley, C.J. et al., Effector gene birth in plant parasitic nematodes: Neofunctionalization of a housekeeping glutathione synthetase gene. PLoS Genet. (2018)

Release Date

2018-04-25

Peptides

Glutathione synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutathione synthetase

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