- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.27 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 15 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 3 residues within 4Å:- Chain A: P.152, R.153, D.154
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:D.154
- Water bridges: A:R.153, A:R.153, A:D.154, A:G.155
- Salt bridges: A:K.157
SO4.9: 2 residues within 4Å:- Chain A: R.117
- Chain B: V.328
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.117
SO4.10: 4 residues within 4Å:- Chain A: K.119, T.121
- Chain B: R.290, L.324
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Water bridges: B:R.290
- Salt bridges: B:R.290, A:K.119
SO4.11: 3 residues within 4Å:- Chain A: D.182, E.183, K.188
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.183
- Water bridges: A:A.184
- Salt bridges: A:K.188
SO4.12: 5 residues within 4Å:- Chain A: T.222, G.223, A.226, H.313, K.315
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.223
- Salt bridges: A:H.313
SO4.20: 3 residues within 4Å:- Chain B: P.152, R.153, D.154
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:D.154
- Water bridges: B:R.153, B:R.153, B:D.154, B:G.155
- Salt bridges: B:K.157
SO4.26: 2 residues within 4Å:- Chain B: R.117
- Chain C: V.328
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.117
SO4.27: 4 residues within 4Å:- Chain B: K.119, T.121
- Chain C: R.290, L.324
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain B- Water bridges: C:R.290
- Salt bridges: C:R.290, B:K.119
SO4.28: 3 residues within 4Å:- Chain B: D.182, E.183, K.188
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.183
- Water bridges: B:A.184
- Salt bridges: B:K.188
SO4.29: 5 residues within 4Å:- Chain B: T.222, G.223, A.226, H.313, K.315
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.223
- Salt bridges: B:H.313
SO4.37: 3 residues within 4Å:- Chain C: P.152, R.153, D.154
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:D.154
- Water bridges: C:R.153, C:R.153, C:D.154, C:G.155
- Salt bridges: C:K.157
SO4.43: 2 residues within 4Å:- Chain A: V.328
- Chain C: R.117
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:R.117
SO4.44: 4 residues within 4Å:- Chain A: R.290, L.324
- Chain C: K.119, T.121
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain C- Water bridges: A:R.290
- Salt bridges: A:R.290, C:K.119
SO4.45: 3 residues within 4Å:- Chain C: D.182, E.183, K.188
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:E.183
- Water bridges: C:A.184
- Salt bridges: C:K.188
SO4.46: 5 residues within 4Å:- Chain C: T.222, G.223, A.226, H.313, K.315
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:G.223
- Salt bridges: C:H.313
- 12 x NO2: NITRITE ION(Non-covalent)
NO2.4: 7 residues within 4Å:- Chain A: V.62, P.63, G.143, N.145, G.173, E.174, Q.175
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.145, A:G.173
NO2.5: 3 residues within 4Å:- Chain A: V.328, V.329, K.330
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.330
NO2.6: 9 residues within 4Å:- Chain A: D.92, H.94, H.129
- Chain B: H.249, I.251, H.300, L.302
- Ligands: CU.2, NO.16
No protein-ligand interaction detected (PLIP)NO2.14: 7 residues within 4Å:- Chain A: R.205
- Chain B: Y.187, T.210, H.211, V.218, E.307, L.308
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:R.205, A:R.205, B:L.308
- Water bridges: B:D.47
NO2.21: 7 residues within 4Å:- Chain B: V.62, P.63, G.143, N.145, G.173, E.174, Q.175
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.145, B:G.173
NO2.22: 3 residues within 4Å:- Chain B: V.328, V.329, K.330
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.330
NO2.23: 9 residues within 4Å:- Chain B: D.92, H.94, H.129
- Chain C: H.249, I.251, H.300, L.302
- Ligands: CU.19, NO.33
No protein-ligand interaction detected (PLIP)NO2.31: 7 residues within 4Å:- Chain B: R.205
- Chain C: Y.187, T.210, H.211, V.218, E.307, L.308
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:L.308, B:R.205, B:R.205
- Water bridges: C:Y.187
NO2.38: 7 residues within 4Å:- Chain C: V.62, P.63, G.143, N.145, G.173, E.174, Q.175
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.145, C:G.173
NO2.39: 3 residues within 4Å:- Chain C: V.328, V.329, K.330
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.330
NO2.40: 9 residues within 4Å:- Chain A: H.249, I.251, H.300, L.302
- Chain C: D.92, H.94, H.129
- Ligands: CU.36, NO.50
No protein-ligand interaction detected (PLIP)NO2.48: 7 residues within 4Å:- Chain A: Y.187, T.210, H.211, V.218, E.307, L.308
- Chain C: R.205
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:L.308, C:R.205, C:R.205
- 6 x ACT: ACETATE ION(Non-functional Binders)
ACT.7: 4 residues within 4Å:- Chain A: F.18, K.168, Y.170, T.228
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.228
- Water bridges: A:K.168
- Salt bridges: A:K.168
ACT.8: 8 residues within 4Å:- Chain A: W.259, A.260, T.261, G.262, K.263, N.266
- Chain B: D.269, Q.272
10 PLIP interactions:2 interactions with chain B, 8 interactions with chain A- Hydrogen bonds: B:Q.272, B:Q.272, A:T.261, A:G.262, A:K.263, A:N.266
- Hydrophobic interactions: A:N.266
- Water bridges: A:A.260, A:A.260, A:A.260
ACT.24: 4 residues within 4Å:- Chain B: F.18, K.168, Y.170, T.228
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.170, B:T.228
- Water bridges: B:K.168
- Salt bridges: B:K.168
ACT.25: 8 residues within 4Å:- Chain B: W.259, A.260, T.261, G.262, K.263, N.266
- Chain C: D.269, Q.272
11 PLIP interactions:9 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:N.266
- Hydrogen bonds: B:T.261, B:T.261, B:G.262, B:K.263, B:N.266, C:Q.272, C:Q.272
- Water bridges: B:A.260, B:A.260, B:A.260
ACT.41: 4 residues within 4Å:- Chain C: F.18, K.168, Y.170, T.228
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:T.228
- Water bridges: C:K.168, C:T.228
- Salt bridges: C:K.168
ACT.42: 8 residues within 4Å:- Chain A: D.269, Q.272
- Chain C: W.259, A.260, T.261, G.262, K.263, N.266
11 PLIP interactions:9 interactions with chain C, 2 interactions with chain A- Hydrophobic interactions: C:N.266
- Hydrogen bonds: C:T.261, C:T.261, C:G.262, C:K.263, C:N.266, A:Q.272, A:Q.272
- Water bridges: C:A.260, C:A.260, C:A.260
- 3 x MLI: MALONATE ION(Non-functional Binders)
MLI.13: 5 residues within 4Å:- Chain A: G.219, T.222, F.306, A.311, H.313
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:A.311
- Water bridges: A:R.48, A:R.48, A:G.219, A:G.309, A:A.311
- Salt bridges: A:H.313, A:H.313
MLI.30: 5 residues within 4Å:- Chain B: G.219, T.222, F.306, A.311, H.313
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:A.311
- Water bridges: B:R.48, B:R.48, B:G.219, B:G.309, B:A.311
- Salt bridges: B:H.313, B:H.313
MLI.47: 5 residues within 4Å:- Chain C: G.219, T.222, F.306, A.311, H.313
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:A.311
- Water bridges: C:R.48, C:R.48, C:G.219, C:G.309, C:A.311
- Salt bridges: C:H.313, C:H.313
- 9 x NO: NITRIC OXIDE(Non-covalent)
NO.15: 2 residues within 4Å:- Chain A: P.82, D.83
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.83
NO.16: 8 residues within 4Å:- Chain A: D.92, H.94, H.129
- Chain B: I.251, H.300, L.302
- Ligands: CU.2, NO2.6
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.94
NO.17: 2 residues within 4Å:- Chain A: G.318, E.319
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.319, A:E.319
- Water bridges: A:E.319
NO.32: 2 residues within 4Å:- Chain B: P.82, D.83
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.83
NO.33: 8 residues within 4Å:- Chain B: D.92, H.94, H.129
- Chain C: I.251, H.300, L.302
- Ligands: CU.19, NO2.23
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.92
NO.34: 2 residues within 4Å:- Chain B: G.318, E.319
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.319, B:E.319
NO.49: 2 residues within 4Å:- Chain C: P.82, D.83
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:D.83
NO.50: 8 residues within 4Å:- Chain A: I.251, H.300, L.302
- Chain C: D.92, H.94, H.129
- Ligands: CU.36, NO2.40
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:D.92
NO.51: 2 residues within 4Å:- Chain C: G.318, E.319
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:E.319, C:E.319, C:E.319
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Horrell, S. et al., Enzyme catalysis captured using multiple structures from one crystal at varying temperatures. IUCrJ (2018)
- Release Date
- 2018-05-23
- Peptides
- Copper-containing nitrite reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.27 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 15 x SO4: SULFATE ION(Non-functional Binders)
- 12 x NO2: NITRITE ION(Non-covalent)
- 6 x ACT: ACETATE ION(Non-functional Binders)
- 3 x MLI: MALONATE ION(Non-functional Binders)
- 9 x NO: NITRIC OXIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Horrell, S. et al., Enzyme catalysis captured using multiple structures from one crystal at varying temperatures. IUCrJ (2018)
- Release Date
- 2018-05-23
- Peptides
- Copper-containing nitrite reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A