- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.34 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 9 x NO2: NITRITE ION(Non-covalent)
NO2.3: 7 residues within 4Å:- Chain A: V.62, P.63, G.143, N.145, G.173, E.174, Q.175
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.145, A:G.173
- Water bridges: A:Q.175
NO2.4: 3 residues within 4Å:- Chain A: V.328, V.329, K.330
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.330
NO2.8: 7 residues within 4Å:- Chain A: R.205
- Chain B: Y.187, T.210, H.211, V.218, E.307, L.308
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:L.308, A:R.205
- Water bridges: B:D.47, A:R.205
NO2.13: 7 residues within 4Å:- Chain B: V.62, P.63, G.143, N.145, G.173, E.174, Q.175
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.145, B:G.173
- Water bridges: B:Q.175
NO2.14: 3 residues within 4Å:- Chain B: V.328, V.329, K.330
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.330
NO2.18: 7 residues within 4Å:- Chain B: R.205
- Chain C: Y.187, T.210, H.211, V.218, E.307, L.308
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:L.308, B:R.205
- Water bridges: C:Y.187, B:R.205
NO2.23: 7 residues within 4Å:- Chain C: V.62, P.63, G.143, N.145, G.173, E.174, Q.175
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.145, C:G.173
- Water bridges: C:Q.175
NO2.24: 3 residues within 4Å:- Chain C: V.328, V.329, K.330
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.330
NO2.28: 7 residues within 4Å:- Chain A: Y.187, T.210, H.211, V.218, E.307, L.308
- Chain C: R.205
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:L.308, C:R.205
- Water bridges: C:R.205
- 3 x ACT: ACETATE ION(Non-functional Binders)
ACT.5: 8 residues within 4Å:- Chain A: W.259, A.260, T.261, G.262, K.263, N.266
- Chain B: D.269, Q.272
8 PLIP interactions:2 interactions with chain B, 6 interactions with chain A- Hydrogen bonds: B:Q.272, B:Q.272, A:T.261, A:G.262, A:K.263, A:N.266
- Hydrophobic interactions: A:N.266
- Water bridges: A:A.260
ACT.15: 8 residues within 4Å:- Chain B: W.259, A.260, T.261, G.262, K.263, N.266
- Chain C: D.269, Q.272
9 PLIP interactions:7 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:N.266
- Hydrogen bonds: B:T.261, B:T.261, B:G.262, B:K.263, B:N.266, C:Q.272, C:Q.272
- Water bridges: B:A.260
ACT.25: 8 residues within 4Å:- Chain A: D.269, Q.272
- Chain C: W.259, A.260, T.261, G.262, K.263, N.266
9 PLIP interactions:2 interactions with chain A, 7 interactions with chain C- Hydrogen bonds: A:Q.272, A:Q.272, C:T.261, C:T.261, C:G.262, C:K.263, C:N.266
- Hydrophobic interactions: C:N.266
- Water bridges: C:A.260
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 1 residues within 4Å:- Chain A: R.117
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.117
SO4.7: 3 residues within 4Å:- Chain A: D.182, E.183, K.188
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:E.183
- Water bridges: A:A.184, A:K.188, A:K.188
- Salt bridges: A:K.188, A:K.202
SO4.16: 1 residues within 4Å:- Chain B: R.117
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.117
SO4.17: 3 residues within 4Å:- Chain B: D.182, E.183, K.188
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:E.183
- Water bridges: B:A.184, B:K.188, B:K.188
- Salt bridges: B:K.188, B:K.202
SO4.26: 1 residues within 4Å:- Chain C: R.117
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:R.117
SO4.27: 3 residues within 4Å:- Chain C: D.182, E.183, K.188
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:E.183
- Water bridges: C:A.184, C:K.188, C:K.188
- Salt bridges: C:K.188, C:K.202
- 6 x NO: NITRIC OXIDE(Non-covalent)
NO.9: 2 residues within 4Å:- Chain A: P.82, D.83
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.83
NO.10: 7 residues within 4Å:- Chain A: D.92, H.94, H.129
- Chain B: H.249, I.251, H.300
- Ligands: CU.2
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:H.249
NO.19: 2 residues within 4Å:- Chain B: P.82, D.83
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.83
NO.20: 7 residues within 4Å:- Chain B: D.92, H.94, H.129
- Chain C: H.249, I.251, H.300
- Ligands: CU.12
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.92
NO.29: 2 residues within 4Å:- Chain C: P.82, D.83
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:D.83, C:D.83
NO.30: 7 residues within 4Å:- Chain A: H.249, I.251, H.300
- Chain C: D.92, H.94, H.129
- Ligands: CU.22
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:D.92
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Horrell, S. et al., Enzyme catalysis captured using multiple structures from one crystal at varying temperatures. IUCrJ (2018)
- Release Date
- 2018-05-23
- Peptides
- Copper-containing nitrite reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.34 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 9 x NO2: NITRITE ION(Non-covalent)
- 3 x ACT: ACETATE ION(Non-functional Binders)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 6 x NO: NITRIC OXIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Horrell, S. et al., Enzyme catalysis captured using multiple structures from one crystal at varying temperatures. IUCrJ (2018)
- Release Date
- 2018-05-23
- Peptides
- Copper-containing nitrite reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A