SMTL ID : 5og1.1

Cryo EM structure of the E. coli disaggregase ClpB (BAP form, DWB mutant), in the ATPgammaS state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

7 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.1: 15 residues within 4Å: Chain A: D.182, P.183, V.184, G.213, G.215, K.216, T.217, A.218, T.319, I.353, L.357, Y.361, D.392, I.395 Chain E: R.336 10 PLIP interactions: 8 interactions with chain A, 2 interactions with chain E Hydrogen bonds: A:D.182, A:G.213, A:G.215, A:K.216, A:T.217, A:T.217, A:A.218, E:R.336, E:R.336 Salt bridges: A:K.216 AGS.2: 13 residues within 4Å: Chain A: G.614, K.615, T.616, E.617, R.635, N.723, R.819 Chain E: D.597, L.695, D.699, D.700, E.756, R.760 10 PLIP interactions: 6 interactions with chain A, 4 interactions with chain E Hydrogen bonds: A:K.615, A:T.616, A:T.616, A:T.616, A:E.617, A:R.635, E:D.597, E:D.700, E:D.700, E:R.760 AGS.3: 13 residues within 4Å: Chain C: R.187, G.213, V.214, G.215, K.216, T.217, A.218, D.282, A.317, I.353, P.391, D.392, I.395 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:R.187, C:R.187, C:K.216, C:T.217, C:T.217, C:A.218, C:D.282, C:D.282 Salt bridges: C:K.216 AGS.4: 16 residues within 4Å: Chain C: R.573, G.612, V.613, G.614, K.615, T.616, E.617, R.635, D.681, T.721, N.723, Q.782, R.819 Chain D: L.695, D.699, D.700 16 PLIP interactions: 1 interactions with chain D, 15 interactions with chain C Hydrogen bonds: D:D.700, C:R.573, C:T.616, C:T.616, C:T.616, C:E.617, C:E.617, C:E.617, C:R.635, C:D.681, C:D.681, C:T.721, C:N.723, C:N.723, C:R.819 Salt bridges: C:K.615 AGS.5: 12 residues within 4Å: Chain A: A.332, R.336 Chain D: P.212, G.213, V.214, G.215, K.216, T.217, T.319, P.391, D.392, I.395 11 PLIP interactions: 10 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:G.213, D:V.214, D:V.214, D:G.215, D:K.216, D:T.217, D:T.217, D:T.217, A:R.336 Salt bridges: D:K.216, D:K.216 AGS.6: 14 residues within 4Å: Chain A: L.695, D.699, R.754, E.756 Chain D: I.575, V.613, G.614, K.615, T.616, E.617, K.620, R.635, D.681, R.819 15 PLIP interactions: 12 interactions with chain D, 3 interactions with chain A Hydrogen bonds: D:G.614, D:K.615, D:T.616, D:T.616, D:T.616, D:K.620, D:K.620, D:R.635, D:R.635, D:R.819, A:L.695, A:E.756 Salt bridges: D:K.615, D:R.819, A:R.754 AGS.7: 17 residues within 4Å: Chain E: D.182, P.183, R.187, E.211, P.212, G.213, V.214, G.215, K.216, T.217, A.218, L.357, Y.361, D.392, I.395 Chain F: A.331, R.335 8 PLIP interactions: 6 interactions with chain E, 2 interactions with chain F Hydrogen bonds: E:R.187, E:E.211, E:V.214, E:G.215, E:K.216, F:A.331 Salt bridges: E:K.216, F:R.335

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deville, C. et al., Structural pathway of regulated substrate transfer and threading through an Hsp100 disaggregase. Sci Adv (2017)

Release Date

2017-08-16

Peptides

Chaperone protein ClpB,ATP-dependent Clp protease ATP-binding subunit ClpA,Chaperone protein ClpB: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
F

C
E

D
D

E
B

F
A

Chaperone protein ClpB,ATP-dependent Clp protease ATP-binding subunit ClpA,Chaperone protein ClpB

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