SMTL ID : 5ogs.1

Crystal structure of human AND-1 SepB domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-trimer

Ligands

6 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 5 residues within 4Å: Chain A: R.341, C.344, K.345, G.346, K.347 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.346, A:G.346 Salt bridges: A:R.341, A:R.341, A:K.347 MLI.2: 6 residues within 4Å: Chain A: W.125, S.127, H.147, V.354, R.364, V.382 5 PLIP interactions: 5 interactions with chain A Water bridges: A:S.127, A:R.364 Salt bridges: A:H.147, A:H.147, A:R.364 MLI.3: 5 residues within 4Å: Chain B: R.341, C.344, K.345, G.346, K.347 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.346, B:G.346 Salt bridges: B:R.341, B:R.341, B:K.347 MLI.4: 6 residues within 4Å: Chain B: W.125, S.127, H.147, V.354, R.364, V.382 5 PLIP interactions: 5 interactions with chain B Water bridges: B:S.127, B:R.364 Salt bridges: B:H.147, B:H.147, B:R.364 MLI.5: 5 residues within 4Å: Chain C: R.341, C.344, K.345, G.346, K.347 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:G.346, C:G.346 Salt bridges: C:R.341, C:R.341, C:K.347 MLI.6: 6 residues within 4Å: Chain C: W.125, S.127, H.147, V.354, R.364, V.382 5 PLIP interactions: 5 interactions with chain C Water bridges: C:S.127, C:R.364 Salt bridges: C:H.147, C:H.147, C:R.364

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kilkenny, M.L. et al., The human CTF4-orthologue AND-1 interacts with DNA polymerase alpha /primase via its unique C-terminal HMG box. Open Biol (2017)

Release Date

2017-11-29

Peptides

WD repeat and HMG-box DNA-binding protein 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

WD repeat and HMG-box DNA-binding protein 1