SMTL ID : 5ohu.1

The X-ray Structure of Lytic Transglycosylase Slt from Pseudomonas aeruginosa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: S.158, Q.159, D.164, F.167, R.184 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.159, A:Q.159, A:D.164 Water bridges: A:R.184 Salt bridges: A:R.184 PO4.2: 2 residues within 4Å: Chain A: R.84, E.88 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.88, A:E.88 Salt bridges: A:R.84 PO4.3: 5 residues within 4Å: Chain A: R.104, D.108, E.127, L.131, A.162 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.127 Water bridges: A:D.108, A:A.162, A:A.162 PO4.4: 2 residues within 4Å: Chain A: K.122, N.124 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.124, A:N.124, A:N.124 Salt bridges: A:K.122 PO4.5: 3 residues within 4Å: Chain A: Y.132, Y.135, Q.141 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.132, A:Y.135, A:Q.141 PO4.6: 4 residues within 4Å: Chain A: K.186, D.239, S.270, E.273 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.270, A:E.273 Water bridges: A:K.183, A:K.183 Salt bridges: A:K.186 PO4.7: 5 residues within 4Å: Chain A: Y.454, H.478, F.506, M.507, S.508 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.508, A:S.508, A:S.508, A:S.508 Salt bridges: A:H.478 PO4.8: 3 residues within 4Å: Chain A: H.478, T.481, D.548 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.481, A:T.481 Water bridges: A:H.478, A:D.548 Salt bridges: A:H.478

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, M. et al., Exolytic and endolytic turnover of peptidoglycan by lytic transglycosylase Slt ofPseudomonas aeruginosa. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-04-18

Peptides

Soluble lytic murein transglycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Soluble lytic murein transglycosylase