SMTL ID : 5ohx.1 (1 other biounit)

Structure of active cystathionine B-synthase from Apis mellifera

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 20 residues within 4Å: Chain A: R.8, S.10, Y.11, C.12, T.13, W.14, A.18, N.20, S.21, P.22, H.23, T.183, P.185, P.188, L.189, Y.192, G.222, R.225, T.271, V.272 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:Y.11, A:A.18, A:P.185, A:P.188, A:L.189, A:Y.192, A:Y.192, A:T.271, A:V.272 Hydrogen bonds: A:P.9, A:Y.11 Salt bridges: A:R.8 pi-Cation interactions: A:R.225 Metal complexes: A:C.12, A:H.23

1 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.2: 15 residues within 4Å: Chain A: K.78, N.108, G.213, A.214, G.215, T.216, G.217, G.218, T.219, G.263, I.264, S.307, P.333, D.334, Y.339 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:K.78, A:P.333 Hydrogen bonds: A:N.108, A:N.187, A:G.213, A:G.215, A:T.216, A:G.217, A:G.218, A:T.219, A:T.219, A:S.307 Salt bridges: A:K.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gimenez-Mascarell, P. et al., Crystal structure of cystathionine beta-synthase from honeybee Apis mellifera. J. Struct. Biol. (2018)

Release Date

2018-01-03

Peptides

Cystathionine beta-synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cystathionine beta-synthase

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