SMTL ID : 5oic.1

InhA (T2A mutant) complexed with (4-((1H-pyrazol-1-yl)methyl)phenyl)methanol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 24 residues within 4Å: Chain A: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, K.165, A.191, G.192, P.193, I.194, T.196, M.199 Ligands: 9VQ.2 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:I.21, A:F.149, A:F.149, A:A.191 Hydrogen bonds: A:G.14, A:S.20, A:I.21, A:D.64, A:V.65, A:I.95, A:G.96, A:K.165, A:I.194, A:I.194, A:T.196 Water bridges: A:A.22, A:F.41, A:F.41, A:F.41, A:I.95, A:L.197 pi-Stacking: A:F.41 NAD.6: 24 residues within 4Å: Chain B: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, K.165, A.191, G.192, P.193, I.194, T.196, M.199 Ligands: 9VQ.7 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:I.21, B:F.149, B:F.149, B:A.191 Hydrogen bonds: B:G.14, B:S.20, B:I.21, B:D.64, B:V.65, B:I.95, B:G.96, B:K.165, B:I.194, B:I.194, B:T.196 Water bridges: B:A.22, B:F.41, B:F.41, B:F.41, B:I.95, B:L.197 pi-Stacking: B:F.41 NAD.11: 24 residues within 4Å: Chain C: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, K.165, A.191, G.192, P.193, I.194, T.196, M.199 Ligands: 9VQ.12 22 PLIP interactions: 22 interactions with chain C Hydrophobic interactions: C:I.21, C:F.149, C:F.149, C:A.191 Hydrogen bonds: C:G.14, C:S.20, C:I.21, C:D.64, C:D.64, C:V.65, C:I.95, C:G.96, C:K.165, C:I.194, C:I.194 Water bridges: C:A.22, C:F.41, C:F.41, C:F.41, C:I.95, C:L.197 pi-Stacking: C:F.41 NAD.16: 24 residues within 4Å: Chain D: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, K.165, A.191, G.192, P.193, I.194, T.196, M.199 Ligands: 9VQ.17 22 PLIP interactions: 22 interactions with chain D Hydrophobic interactions: D:I.21, D:F.149, D:F.149, D:A.191 Hydrogen bonds: D:G.14, D:S.20, D:I.21, D:D.64, D:D.64, D:V.65, D:I.95, D:G.96, D:K.165, D:I.194, D:I.194 Water bridges: D:A.22, D:F.41, D:F.41, D:F.41, D:I.95, D:L.197 pi-Stacking: D:F.41

4 x 9VQ: [4-(pyrazol-1-ylmethyl)phenyl]methanol(Non-covalent)

9VQ.2: 11 residues within 4Å: Chain A: G.96, F.97, M.98, M.103, F.149, Y.158, M.161, K.165, M.199, I.202 Ligands: NAD.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.149, A:Y.158 Hydrogen bonds: A:M.98, A:M.98 9VQ.7: 11 residues within 4Å: Chain B: G.96, F.97, M.98, M.103, F.149, Y.158, M.161, K.165, M.199, I.202 Ligands: NAD.6 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.149, B:Y.158 Hydrogen bonds: B:M.98, B:M.98 9VQ.12: 11 residues within 4Å: Chain C: G.96, F.97, M.98, M.103, F.149, Y.158, M.161, K.165, M.199, I.202 Ligands: NAD.11 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:F.149, C:Y.158 Hydrogen bonds: C:M.98, C:M.98 9VQ.17: 11 residues within 4Å: Chain D: G.96, F.97, M.98, M.103, F.149, Y.158, M.161, K.165, M.199, I.202 Ligands: NAD.16 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:F.149, D:Y.158 Hydrogen bonds: D:M.98, D:M.98

12 x ETX: 2-ETHOXYETHANOL(Non-covalent)

ETX.3: 7 residues within 4Å: Chain A: S.19, H.24, I.194, K.233, D.234, A.235, T.236 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.235 ETX.4: 6 residues within 4Å: Chain A: S.152 Chain B: D.150, S.152, Y.259, H.265, T.266 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.150, B:S.152 Water bridges: B:R.153 ETX.5: 5 residues within 4Å: Chain A: S.19, R.195, T.196, L.197, S.200 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.19, A:S.19, A:S.200 ETX.8: 7 residues within 4Å: Chain B: S.19, H.24, I.194, K.233, D.234, A.235, T.236 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.235 ETX.9: 6 residues within 4Å: Chain A: D.150, S.152, Y.259, H.265, T.266 Chain B: S.152 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.150, A:S.152 Water bridges: A:R.153 ETX.10: 5 residues within 4Å: Chain B: S.19, R.195, T.196, L.197, S.200 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.19, B:S.19, B:S.200 ETX.13: 7 residues within 4Å: Chain C: S.19, H.24, I.194, K.233, D.234, A.235, T.236 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:A.235 ETX.14: 6 residues within 4Å: Chain C: S.152 Chain D: D.150, S.152, Y.259, H.265, T.266 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:D.150, D:S.152, D:H.265 Water bridges: D:R.153 ETX.15: 5 residues within 4Å: Chain C: S.19, R.195, T.196, L.197, S.200 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.19, C:S.19, C:S.200 ETX.18: 7 residues within 4Å: Chain D: S.19, H.24, I.194, K.233, D.234, A.235, T.236 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:A.235 ETX.19: 6 residues within 4Å: Chain C: D.150, S.152, Y.259, H.265, T.266 Chain D: S.152 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.150, C:S.152, C:H.265 Water bridges: C:R.153 ETX.20: 5 residues within 4Å: Chain D: S.19, R.195, T.196, L.197, S.200 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.19, D:S.19, D:S.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prati, F. et al., Screening of a Novel Fragment Library with Functional Complexity against Mycobacterium tuberculosis InhA. ChemMedChem (2018)

Release Date

2018-02-14

Peptides

Enoyl-[acyl-carrier-protein] reductase [NADH]: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Enoyl-[acyl-carrier-protein] reductase [NADH]

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