SMTL ID : 5oiq.1

InhA (T2A mutant) complexed with 2,6-dimethyl-3-phenylpyridin-4(1H)-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-tetramer

Ligands

4 x 9WB: 2,6-dimethyl-3-phenyl-1~{H}-pyridin-4-one(Non-covalent)

9WB.1: 11 residues within 4Å: Chain A: G.96, F.97, M.98, M.103, F.149, Y.158, M.161, P.193, T.196, M.199 Ligands: NAD.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.149, A:F.149, A:Y.158 Hydrogen bonds: A:Y.158 9WB.3: 10 residues within 4Å: Chain B: G.96, F.97, M.98, M.103, F.149, Y.158, M.161, P.193, T.196 Ligands: NAD.4 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.149, B:F.149, B:Y.158, B:P.193 9WB.5: 11 residues within 4Å: Chain C: G.96, F.97, M.98, M.103, F.149, Y.158, M.161, P.193, I.194, T.196 Ligands: NAD.6 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:F.149, C:F.149, C:Y.158, C:P.193 Hydrogen bonds: C:Y.158 9WB.7: 10 residues within 4Å: Chain D: G.96, F.97, M.98, M.103, F.149, Y.158, M.161, P.193, T.196 Ligands: NAD.8 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:F.149, D:Y.158, D:P.193 Hydrogen bonds: D:Y.158 pi-Stacking: D:F.149

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.2: 24 residues within 4Å: Chain A: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, M.161, K.165, A.191, G.192, P.193, I.194, T.196 Ligands: 9WB.1 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:I.21, A:F.149 Hydrogen bonds: A:G.14, A:S.20, A:I.21, A:D.64, A:D.64, A:V.65, A:I.95, A:G.96, A:K.165, A:I.194, A:T.196, A:T.196, A:T.196 Water bridges: A:S.94, A:I.95 pi-Stacking: A:F.41 NAD.4: 24 residues within 4Å: Chain B: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, M.161, K.165, A.191, G.192, P.193, I.194, T.196 Ligands: 9WB.3 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:I.21, B:F.149, B:A.191 Hydrogen bonds: B:G.14, B:G.14, B:I.21, B:D.64, B:V.65, B:I.95, B:G.96, B:K.165, B:I.194, B:I.194, B:T.196, B:T.196 Water bridges: B:A.22, B:I.95 pi-Stacking: B:F.41 NAD.6: 24 residues within 4Å: Chain C: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, M.161, K.165, A.191, G.192, P.193, I.194, T.196 Ligands: 9WB.5 20 PLIP interactions: 20 interactions with chain C Hydrophobic interactions: C:I.21, C:F.149, C:A.191 Hydrogen bonds: C:G.14, C:S.20, C:I.21, C:D.64, C:D.64, C:V.65, C:I.95, C:G.96, C:K.165, C:I.194, C:I.194, C:T.196 Water bridges: C:A.22, C:F.41, C:F.41, C:I.95 pi-Stacking: C:F.41 NAD.8: 25 residues within 4Å: Chain D: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, M.161, K.165, A.191, G.192, P.193, I.194, T.196, A.198 Ligands: 9WB.7 21 PLIP interactions: 21 interactions with chain D Hydrophobic interactions: D:I.21, D:F.149, D:F.149 Hydrogen bonds: D:G.14, D:G.14, D:I.21, D:D.64, D:V.65, D:I.95, D:G.96, D:K.165, D:I.194, D:I.194, D:T.196 Water bridges: D:G.14, D:A.22, D:F.41, D:I.95, D:A.198, D:A.198 pi-Stacking: D:F.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prati, F. et al., Screening of a Novel Fragment Library with Functional Complexity against Mycobacterium tuberculosis InhA. ChemMedChem (2018)

Release Date

2018-02-14

Peptides

Enoyl-[acyl-carrier-protein] reductase [NADH]: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Enoyl-[acyl-carrier-protein] reductase [NADH]

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