SMTL ID : 5ois.1

InhA (T2A mutant) complexed with 4-((5-Amino-3-methyl-1H-pyrazol-1-yl)methyl)-N-(2-chloro-4-fluorobenzyl)benzamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

homo-tetramer

Ligands

4 x 9WK: 4-[(5-azanyl-3-methyl-pyrazol-1-yl)methyl]-~{N}-[(2-chloranyl-4-fluoranyl-phenyl)methyl]benzamide(Non-covalent)

9WK.1: 15 residues within 4Å: Chain A: G.96, F.97, M.98, Q.100, M.103, F.149, M.161, T.196, A.198, M.199, A.201, I.202, A.206, L.207 Ligands: NAD.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.97, A:F.149, A:A.198, A:I.202, A:L.207 Hydrogen bonds: A:M.98 Water bridges: A:T.196 Halogen bonds: A:M.103 9WK.3: 15 residues within 4Å: Chain B: G.96, F.97, M.98, Q.100, M.103, F.149, M.161, T.196, A.198, M.199, A.201, I.202, A.206, L.207 Ligands: NAD.4 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.97, B:Q.100, B:F.149, B:A.198, B:I.202, B:L.207 Hydrogen bonds: B:M.98 Water bridges: B:T.196 9WK.5: 16 residues within 4Å: Chain C: G.96, F.97, M.98, Q.100, M.103, F.149, Y.158, M.161, T.196, A.198, M.199, A.201, I.202, A.206, L.207 Ligands: NAD.6 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:F.97, C:Q.100, C:F.149, C:Y.158, C:A.198, C:I.202, C:L.207 Hydrogen bonds: C:M.98, C:T.196 Water bridges: C:T.196, C:M.199 9WK.7: 15 residues within 4Å: Chain D: G.96, F.97, M.98, Q.100, M.103, F.149, M.161, T.196, A.198, M.199, A.201, I.202, A.206, L.207 Ligands: NAD.8 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:F.97, D:Q.100, D:F.149, D:A.198, D:I.202, D:L.207 Hydrogen bonds: D:M.98, D:T.196 Water bridges: D:T.196, D:M.199

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.2: 23 residues within 4Å: Chain A: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, K.165, A.191, G.192, P.193, I.194, T.196 Ligands: 9WK.1 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:I.21, A:F.149, A:F.149, A:A.191 Hydrogen bonds: A:G.14, A:S.20, A:I.21, A:D.64, A:V.65, A:I.95, A:G.96, A:K.165, A:I.194, A:I.194, A:T.196, A:T.196 Water bridges: A:G.14, A:A.22, A:F.41, A:I.95, A:L.197 pi-Stacking: A:F.41 NAD.4: 23 residues within 4Å: Chain B: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, K.165, A.191, G.192, P.193, I.194, T.196 Ligands: 9WK.3 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:F.149, B:F.149, B:A.191 Hydrogen bonds: B:G.14, B:S.20, B:I.21, B:D.64, B:V.65, B:I.95, B:G.96, B:K.165, B:I.194, B:I.194, B:T.196, B:T.196 Water bridges: B:A.22, B:F.41, B:F.41, B:F.41, B:I.95, B:L.197 pi-Stacking: B:F.41 NAD.6: 25 residues within 4Å: Chain C: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, K.165, A.191, G.192, P.193, I.194, T.196, L.197, M.199 Ligands: 9WK.5 24 PLIP interactions: 24 interactions with chain C Hydrophobic interactions: C:I.21, C:F.149, C:F.149, C:A.191 Hydrogen bonds: C:G.14, C:S.20, C:I.21, C:D.64, C:D.64, C:V.65, C:I.95, C:G.96, C:K.165, C:I.194, C:I.194, C:T.196 Water bridges: C:A.22, C:F.41, C:I.95, C:T.196, C:L.197, C:L.197, C:A.198 pi-Stacking: C:F.41 NAD.8: 24 residues within 4Å: Chain D: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, K.165, A.191, G.192, P.193, I.194, T.196, M.199 Ligands: 9WK.7 20 PLIP interactions: 20 interactions with chain D Hydrophobic interactions: D:F.149, D:F.149, D:A.191 Hydrogen bonds: D:G.14, D:S.20, D:I.21, D:D.64, D:D.64, D:V.65, D:I.95, D:G.96, D:K.165, D:I.194, D:I.194, D:T.196 Water bridges: D:A.22, D:I.95, D:T.196, D:A.198 pi-Stacking: D:F.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prati, F. et al., Screening of a Novel Fragment Library with Functional Complexity against Mycobacterium tuberculosis InhA. ChemMedChem (2018)

Release Date

2018-02-14

Peptides

Enoyl-[acyl-carrier-protein] reductase [NADH]: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
F

D
H

Enoyl-[acyl-carrier-protein] reductase [NADH]

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