SMTL ID : 5oj1.1

Penicillin Binding Protein 2x (PBP2x) from S.pneumoniae in complex with Oxacillin and a tetrasaccharide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

monomer

Ligands

1 x 1S6: (2R,4S)-5,5-dimethyl-2-[(1R)-1-{[(5-methyl-3-phenyl-1,2-oxazol-4-yl)carbonyl]amino}-2-oxoethyl]-1,3-thiazolidine-4-carb oxylic acid(Covalent)

1S6.1: 15 residues within 4Å: Chain A: G.288, S.289, K.292, D.325, W.326, N.329, S.347, N.349, F.402, Q.404, S.500, G.501, T.502, Q.504, Y.520 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:N.329, A:F.402, A:Y.520 Hydrogen bonds: A:N.349, A:T.502, A:T.502, A:T.502, A:Q.504

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: L.498, S.500 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.500

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bernardo-Garcia, N. et al., Allostery, Recognition of Nascent Peptidoglycan, and Cross-linking of the Cell Wall by the Essential Penicillin-Binding Protein 2x of Streptococcus pneumoniae. ACS Chem. Biol. (2018)

Release Date

2018-05-30

Peptides

Penicillin-binding protein 2X: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Penicillin-binding protein 2X

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