SMTL ID : 5ojk.1

Crystal structure of the human neuroligin 1 cholinesterase domain containing spliced sequence B (SSB) (NL1(-A+B))

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: R.21, N.67, T.69 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.21, A:N.67 NAG.4: 2 residues within 4Å: Chain B: R.21, N.67 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.21

4 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 3 residues within 4Å: Chain A: E.50, Q.293, K.294 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.294 PGE.3: 6 residues within 4Å: Chain A: S.177, G.179, D.180, K.184, I.318, D.319 No protein-ligand interaction detected (PLIP) PGE.5: 3 residues within 4Å: Chain B: E.290, Q.293, K.294 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.294 PGE.6: 5 residues within 4Å: Chain B: S.177, G.179, K.184, I.318, D.319 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.177, B:K.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elegheert, J. et al., Structural Mechanism for Modulation of Synaptic Neuroligin-Neurexin Signaling by MDGA Proteins. Neuron (2017)

Release Date

2017-08-23

Peptides

Neuroligin-1,Neuroligin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Neuroligin-1,Neuroligin-1