SMTL ID : 5ojn.1

Sirtuin 4 from Xenopus tropicalis in complex with thioacetyl-ADP-ribose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.139, C.142, C.190, C.193 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.139, A:C.142, A:C.190, A:C.193

1 x 9X8: thioacetyl-ADP-ribose(Non-covalent)

9X8.2: 26 residues within 4Å: Chain A: V.3, P.4, G.32, A.33, G.34, T.37, E.38, D.43, Y.44, R.45, S.46, Y.52, Q.113, H.131, T.202, G.230, S.231, S.232, L.233, V.235, N.256, I.257, G.258, A.272, R.273, C.274 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:A.33, A:E.38, A:Y.44, A:R.45, A:R.45, A:Y.52, A:Y.52, A:Q.113, A:H.131, A:S.232, A:L.233, A:N.256, A:I.257, A:G.258, A:C.274 Water bridges: A:E.38, A:S.46, A:Q.234, A:V.235 Salt bridges: A:R.45, A:R.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pannek, M. et al., Crystal structures of the mitochondrial deacylase Sirtuin 4 reveal isoform-specific acyl recognition and regulation features. Nat Commun (2017)

Release Date

2017-11-29

Peptides

NAD-dependent protein deacylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-dependent protein deacylase

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