SMTL ID : 5ok1.1

D10N variant of beta-phosphoglucomutase from Lactococcus lactis trapped with native beta-glucose 1,6-bisphosphate intermediate to 1.9A resolution.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.8, N.10, E.169, D.170 Ligands: B16.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.8, A:N.10, A:D.170, H2O.1, H2O.2

1 x B16: 1,6-di-O-phosphono-beta-D-glucopyranose(Non-covalent)

B16.2: 18 residues within 4Å: Chain A: D.8, L.9, N.10, H.20, L.44, K.45, G.46, V.47, R.49, S.52, K.76, S.114, A.115, S.116, K.117, N.118, K.145 Ligands: MG.1 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:L.9, A:N.10, A:N.10, A:G.46, A:S.52, A:S.114, A:A.115, A:S.116, A:K.117, A:N.118, A:N.118 Water bridges: A:D.8, A:N.10, A:H.20, A:K.45, A:R.49, A:K.76, A:K.76, A:A.115, A:S.116, A:K.145, A:K.145 Salt bridges: A:H.20, A:R.49, A:K.76, A:K.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnson, L.A. et al., van der Waals Contact between Nucleophile and Transferring Phosphorus Is Insufficient To Achieve Enzyme Transition-State Architecture. Acs Catalysis (2018)

Release Date

2018-08-29

Peptides

Beta-phosphoglucomutase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-phosphoglucomutase

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