SMTL ID : 5okn.6 (7 other biounits)

Crystal structure of human SHIP2 Phosphatase-C2 D607A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: N.15, E.56, H.144, S.147, N.192, Y.244, H.301 Ligands: MG.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.15, A:E.56, A:E.56, A:S.147, A:N.192 Water bridges: A:R.194 Salt bridges: A:H.144, A:H.301

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: E.56, D.300 Ligands: PO4.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.56, H2O.1

1 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

B3P.3: 8 residues within 4Å: Chain A: G.33, L.34, G.35, K.36, T.37, D.39, E.40, D.294 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.37, A:T.37, A:D.39, A:D.39, A:E.40, A:D.294

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 8 residues within 4Å: Chain A: H.107, S.130, F.131, M.132, G.169, D.170, R.171, F.182 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.130, A:D.170 EDO.5: 6 residues within 4Å: Chain A: N.174, A.175, D.177, E.419, H.441, R.442 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.177, A:D.177, A:H.441, A:R.442 EDO.6: 5 residues within 4Å: Chain A: L.38, V.41, T.44, I.45, H.47 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.45 EDO.7: 8 residues within 4Å: Chain A: T.342, A.343, S.344, S.371, N.373, I.374, F.376, L.377 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.343, A:F.376

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Le Coq, J. et al., Structural basis for interdomain communication in SHIP2 providing high phosphatase activity. Elife (2017)

Release Date

2017-08-23

Peptides

Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2

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