SMTL ID : 5ol1.1

Crystal structure of an inactivated Ssp SICLOPPS intein with a CAFHPQ extein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: N.25, V.75, D.76 Ligands: SO4.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.76

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 3 residues within 4Å: Chain A: H.40, Q.42, D.113 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.42

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 1 residues within 4Å: Chain A: Q.22 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.22

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: H.35, C.37, A.38, F.39 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.39 Water bridges: A:H.40, A:Q.42, A:Q.42 Salt bridges: A:H.35 SO4.5: 6 residues within 4Å: Chain A: D.23, H.24, N.25, H.35, L.123 Ligands: EDO.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.24, A:N.25 Water bridges: A:D.23 Salt bridges: A:H.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kick, L.M. et al., Mechanistic Insights into Cyclic Peptide Generation by DnaE Split-Inteins through Quantitative and Structural Investigation. Chembiochem (2017)

Release Date

2017-09-27

Peptides

DNA polymerase III subunit alpha,DNA polymerase III subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase III subunit alpha,DNA polymerase III subunit alpha