- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.28 Å
- Oligo State
- hetero-3-3-3-mer
- Ligands
- 51 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 9 x SO4: SULFATE ION(Non-functional Binders)
SO4.11: 2 residues within 4Å:- Chain B: L.108, R.112
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.112
SO4.21: 3 residues within 4Å:- Chain C: V.558, K.559, E.560
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:K.559, C:E.560
- Water bridges: C:P.557, C:E.560
- Salt bridges: C:K.559
SO4.22: 5 residues within 4Å:- Chain C: K.511
- Chain F: K.511
- Chain I: K.511
- Ligands: SO4.45, SO4.68
3 PLIP interactions:1 interactions with chain I, 1 interactions with chain C, 1 interactions with chain F- Salt bridges: I:K.511, C:K.511, F:K.511
SO4.34: 2 residues within 4Å:- Chain E: L.108, R.112
1 PLIP interactions:1 interactions with chain E- Salt bridges: E:R.112
SO4.44: 3 residues within 4Å:- Chain F: V.558, K.559, E.560
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:K.559, F:E.560
- Water bridges: F:P.557, F:E.560
- Salt bridges: F:K.559
SO4.45: 5 residues within 4Å:- Chain C: K.511
- Chain F: K.511
- Chain I: K.511
- Ligands: SO4.22, SO4.68
3 PLIP interactions:1 interactions with chain I, 1 interactions with chain C, 1 interactions with chain F- Salt bridges: I:K.511, C:K.511, F:K.511
SO4.57: 2 residues within 4Å:- Chain H: L.108, R.112
1 PLIP interactions:1 interactions with chain H- Salt bridges: H:R.112
SO4.67: 3 residues within 4Å:- Chain I: V.558, K.559, E.560
5 PLIP interactions:5 interactions with chain I- Hydrogen bonds: I:K.559, I:E.560
- Water bridges: I:P.557, I:E.560
- Salt bridges: I:K.559
SO4.68: 5 residues within 4Å:- Chain C: K.511
- Chain F: K.511
- Chain I: K.511
- Ligands: SO4.22, SO4.45
3 PLIP interactions:1 interactions with chain C, 1 interactions with chain F, 1 interactions with chain I- Salt bridges: C:K.511, F:K.511, I:K.511
- 6 x NI: NICKEL (II) ION(Non-covalent)
NI.12: 7 residues within 4Å:- Chain C: K.220, H.222, H.249, H.275, G.280
- Ligands: NI.13, 9XN.23
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:H.249, C:H.275, C:G.280
NI.13: 6 residues within 4Å:- Chain C: H.137, H.139, K.220, D.363
- Ligands: NI.12, 9XN.23
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:H.137, C:H.139, C:D.363
NI.35: 7 residues within 4Å:- Chain F: K.220, H.222, H.249, H.275, G.280
- Ligands: NI.36, 9XN.46
3 PLIP interactions:3 interactions with chain F- Metal complexes: F:H.249, F:H.275, F:G.280
NI.36: 6 residues within 4Å:- Chain F: H.137, H.139, K.220, D.363
- Ligands: NI.35, 9XN.46
3 PLIP interactions:3 interactions with chain F- Metal complexes: F:H.137, F:H.139, F:D.363
NI.58: 7 residues within 4Å:- Chain I: K.220, H.222, H.249, H.275, G.280
- Ligands: NI.59, 9XN.69
3 PLIP interactions:3 interactions with chain I- Metal complexes: I:H.249, I:H.275, I:G.280
NI.59: 6 residues within 4Å:- Chain I: H.137, H.139, K.220, D.363
- Ligands: NI.58, 9XN.69
3 PLIP interactions:3 interactions with chain I- Metal complexes: I:H.137, I:H.139, I:D.363
- 3 x 9XN: Phosphoramidothioic O,O-acid(Non-covalent)
9XN.23: 16 residues within 4Å:- Chain C: H.137, H.139, A.170, K.220, H.222, H.249, H.275, G.280, C.322, H.323, R.339, D.363, A.366, M.367
- Ligands: NI.12, NI.13
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:A.366
9XN.46: 16 residues within 4Å:- Chain F: H.137, H.139, A.170, K.220, H.222, H.249, H.275, G.280, C.322, H.323, R.339, D.363, A.366, M.367
- Ligands: NI.35, NI.36
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:A.366
9XN.69: 16 residues within 4Å:- Chain I: H.137, H.139, A.170, K.220, H.222, H.249, H.275, G.280, C.322, H.323, R.339, D.363, A.366, M.367
- Ligands: NI.58, NI.59
4 PLIP interactions:4 interactions with chain I- Hydrogen bonds: I:H.249, I:H.275, I:G.280, I:A.366
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mazzei, L. et al., Urease Inhibition in the Presence of N-(n-Butyl)thiophosphoric Triamide, a Suicide Substrate: Structure and Kinetics. Biochemistry (2017)
- Release Date
- 2018-03-07
- Peptides
- Urease subunit gamma: ADG
Urease subunit beta: BEH
Urease subunit alpha: CFI - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
AG
AB
BE
BH
BC
CF
CI
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.28 Å
- Oligo State
- hetero-3-3-3-mer
- Ligands
- 51 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 9 x SO4: SULFATE ION(Non-functional Binders)
- 6 x NI: NICKEL (II) ION(Non-covalent)
- 3 x 9XN: Phosphoramidothioic O,O-acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mazzei, L. et al., Urease Inhibition in the Presence of N-(n-Butyl)thiophosphoric Triamide, a Suicide Substrate: Structure and Kinetics. Biochemistry (2017)
- Release Date
- 2018-03-07
- Peptides
- Urease subunit gamma: ADG
Urease subunit beta: BEH
Urease subunit alpha: CFI - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
AG
AB
BE
BH
BC
CF
CI
C