SMTL ID : 5olu.1

The crystal structure of a highly thermostable carboxyl esterase from Bacillus coagulans in complex with glycerol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 13 residues within 4Å: Chain A: G.73, F.74, G.75, E.76, R.80, H.149, S.150, W.226, I.227, H.237, F.245, H.320, E.321 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.149, A:S.150, A:H.237, A:H.320, A:E.321 Water bridges: A:F.74 GOL.2: 6 residues within 4Å: Chain A: R.80, I.233, D.236, N.324, R.326, R.329 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.324, A:R.326, A:R.326 Water bridges: A:R.80 GOL.3: 3 residues within 4Å: Chain A: Q.40, E.41, L.42 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.41, A:E.41 Water bridges: A:E.41

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: Y.139, P.140, D.141, L.142 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: R.62 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: I.193, G.198, Q.199, R.252 Ligand excluded by PLIP CL.7: 7 residues within 4Å: Chain A: G.177, R.178, F.179, A.182, M.261, E.262, V.265 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: H.83, R.329 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: R.178, W.302 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain A: K.221, T.222, D.225, P.231, V.234 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: F.44, Q.45 Ligand excluded by PLIP

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.12: 6 residues within 4Å: Chain A: W.113, P.241, N.243, N.244, T.246, T.247 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.244, A:T.247, A:T.247

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.13: 2 residues within 4Å: Chain A: R.62, E.90 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.62, A:R.62 Salt bridges: A:R.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Vitis, V. et al., A stereospecific carboxyl esterase from Bacillus coagulans hosting nonlipase activity within a lipase-like fold. FEBS J. (2018)

Release Date

2017-12-06

Peptides

Alpha/beta hydrolase family protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha/beta hydrolase family protein