SMTL ID : 5om3.1

Crystal structure of Alpha1-antichymotrypsin variant DBS-I5: a MMP14-cleavable drug-binding serpin for doxycycline

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 3 residues within 4Å: Chain A: L.136, D.137, R.138 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.137, A:R.138, A:R.138

1 x DXT: (4S,4AR,5S,5AR,6R,12AS)-4-(DIMETHYLAMINO)-3,5,10,12,12A-PENTAHYDROXY-6-METHYL-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2-CARBOXAMIDE(Non-covalent)

DXT.2: 7 residues within 4Å: Chain A: L.282, S.283, F.286, D.287 Chain B: D.22, H.23, W.26 9 PLIP interactions: 4 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:L.282, A:F.286, A:F.286, A:F.286, B:H.23, B:W.26, B:W.26, B:W.26 Hydrogen bonds: B:H.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmidt, K. et al., Design of an allosterically modulated doxycycline and doxorubicin drug-binding protein. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-05-23

Peptides

Alpha-1-antichymotrypsin: A
Alpha-1-antichymotrypsin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alpha-1-antichymotrypsin

Alpha-1-antichymotrypsin