SMTL ID : 5omb.1

Crystal structure of K. lactis Ddc2 N-terminus in complex with S. cerevisiae Rfa1 N-OB domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

hetero-2-2-mer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Chain A: L.49 Ligand excluded by PLIP CL.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain D: K.46 Ligand excluded by PLIP

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain B: R.64, N.65 Chain C: V.20, N.21, P.31, I.32 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:V.20, C:I.32, C:I.32, B:N.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deshpande, I. et al., Structural Basis of Mec1-Ddc2-RPA Assembly and Activation on Single-Stranded DNA at Sites of Damage. Mol. Cell (2017)

Release Date

2017-10-25

Peptides

Replication factor A protein 1: AB
DNA damage checkpoint protein LCD1: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Replication factor A protein 1

DNA damage checkpoint protein LCD1

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