SMTL ID : 5omi.1

Crystal structure of GP2 from Lassa virus in a post fusion conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.56 Å

Oligo State

homo-trimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: Q.47, M.50 Chain B: Q.47 Chain C: Q.47 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: N.18 Chain B: N.18 Chain C: N.18 Ligands: NA.5 Ligand excluded by PLIP

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: Y.92, N.94 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.94 NAG.4: 1 residues within 4Å: Chain B: N.94 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.94 NAG.6: 2 residues within 4Å: Chain C: Y.92, N.94 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.94

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 2 residues within 4Å: Chain C: M.11 Ligands: CL.2 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:M.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shulman, A. et al., Variations in Core Packing of GP2 from Old World Mammarenaviruses in their Post-Fusion Conformations Affect Membrane-Fusion Efficiencies. J.Mol.Biol. (2019)

Release Date

2018-08-29

Peptides

Pre-glycoprotein polyprotein GP complex: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Pre-glycoprotein polyprotein GP complex