SMTL ID : 5omu.1

Crystal structure of Amycolatopsis cytochrome P450 GcoA in complex with syringol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 28 residues within 4Å: Chain A: I.82, I.83, H.90, R.94, L.101, Y.244, A.248, E.251, P.252, P.293, I.294, T.298, R.300, Y.323, A.350, F.351, G.352, A.353, N.355, H.356, A.357, C.358, A.359, G.360, F.363, A.364, M.368 Ligands: 3DM.2 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:I.83, A:L.101, A:Y.244, A:Y.244, A:A.248, A:E.251, A:P.252, A:P.293, A:I.294, A:T.298, A:F.351, A:F.351, A:A.359 Hydrogen bonds: A:A.353, A:A.353 Salt bridges: A:H.90, A:R.94, A:R.300, A:H.356 Metal complexes: A:C.358

1 x 3DM: 2,6-dimethoxyphenol(Non-covalent)

3DM.2: 12 residues within 4Å: Chain A: F.77, I.83, F.171, V.243, L.246, G.247, A.248, I.294, A.297, T.298, F.397 Ligands: HEM.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.294, A:T.298 Hydrogen bonds: A:G.247, A:A.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mallinson, S.J.B. et al., A promiscuous cytochrome P450 aromatic O-demethylase for lignin bioconversion. Nat Commun (2018)

Release Date

2018-07-04

Peptides

Cytochrome P450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450

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